| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,286,612 | A→T | 17.4% | intergenic (+86/+454) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,286,612 | 0 | A | T | 17.4% | 138.3 / 2.8 | 57 | intergenic (+86/+454) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| Reads supporting (aligned to +/- strand): ref base A (14/32); new base T (9/2); total (23/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.25e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGATGGTGTGGCGTTTATCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAA > NC_000913/1286379‑1286840 | cGATGGTGTGGCGTTTATCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGGTTTTTTATTGGCACGGGTGGGGGGGGGTTGTCGGGTGCGGTTCCCTTTTCC‑gg > 2:644300/1‑238 (MQ=255) ggttttgtgTTTTTCTTCCGTCTGCCCCTGGTGCTGGGGATGACGTTATTCCTGCGGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTa < 2:554757/231‑1 (MQ=255) tgGCGTTTATCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGGTTTTTTTTGGGCACGGGGCGGGGGGAGTGTTCGGTTGCGCTTCGCTTATCC‑GACCTCCAgg > 1:19203/1‑239 (MQ=255) ggCGTTTATCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAggg < 1:644300/239‑1 (MQ=255) gCGTTTATCTTCCGTCTGCCCCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAggg < 1:729527/238‑1 (MQ=255) tATCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGGTTTTTTATGGGCACGGTGCTGGGTGAGTTGTCGGGTGCGCCTCCCTTTTCC‑GGCCTTCAGGgggggag > 1:252787/1‑238 (MQ=255) tATCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGAC‑GGGGTTTTTTTATGGGCACGGTGCGGGGGGAGTTTTCGGAAGCGCTTCGCTTATAC‑GACCCAAAGGggcggga > 1:170335/1‑237 (MQ=255) aTCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGGGAGTTGTCGGTTGCGCTTCCCTTTTCC‑GACCTACAGGGGAGGatt > 1:554757/1‑238 (MQ=255) tCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTTGAGGATCTGACACGTACGTACCAGCTGGTGCGCGCCCGTCACTAAGCGCATTTTAGTTCACATAGACCCGGCTTCGGCGGGGGGTTTTTCATGGTC‑CGGTCCGGGGGGAGGGGTGGGATGCGGTTAGCTTTACC‑GACCGACGAGGGGGGATAGTgaaagg > 2:605451/1‑234 (MQ=255) tGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGGTTTTTTATGGGCACGGTGCGGGGGGAGTTGTCGGGTGGGCTTCGCTTTTCC‑GACCTCAAGGGGGCGGTTTTTTAGGccc > 1:846128/1‑239 (MQ=255) cccgtgTGCTGGGGATTGCGTTACTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCgg < 1:488988/233‑1 (MQ=255) tgttGGGGGTGGCGTTTTTCCTGCGTTTCCCGTTTTCGCGTCTGATACACATCTGGGGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGGGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACg < 2:756076/235‑1 (MQ=255) gACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACAGTGCGGGGTGAGTTGTCGGATGAGCTTCGCTTTTCC‑GACCTACAGGGGGGGTGATTGTGGGGCCGGGAAACGGGGTG‑cccaag > 2:441219/1‑235 (MQ=255) gTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGgga < 1:777293/202‑1 (MQ=255) gtgTTCCCGTTCTCGGGTTTTATACACATCGGGAGGGTACCGGTGGAGTATCGGACACGTAAGTACCAGCGGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCt < 2:511813/238‑1 (MQ=255) ctgTTCCCGTTTCCGCGTTTGGTTCCCATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCt < 2:222010/239‑1 (MQ=255) ctgTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGGTTTTTTATTGGCACGGTGCGGGGGGAGTTGTCGGATGCGCTTCCCTTTTCC‑GACCTACAGGGGGGGATATTGTAGGCCCGGTAAACCGGGGG‑CCA‑TCGGGCAGAATTAGc > 1:23639/1‑238 (MQ=255) tgTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTCGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCt < 1:826164/238‑1 (MQ=255) gTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCg < 1:778441/239‑1 (MQ=255) cgcgTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGGGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACCGGGGAGGATATTGTAGGCCCGGGAAACGTGGGG‑CCT‑TCGGGCCAAATTTGCTCGGGGGAACAggg > 1:696775/1‑238 (MQ=255) agagacagcaTCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGa < 1:52031/231‑1 (MQ=255) ctttGGGGCGTTCCGGTGGAGTATCTGAACCGTAAGTACCAGCTGGTGGGCGCTCGTCACTAATGGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAg < 2:751763/236‑1 (MQ=255) aTCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAAc < 1:207874/187‑1 (MQ=255) aTCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCt < 1:195136/212‑1 (MQ=255) tACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGGGGGTTGTCGGATTCGCTTCGCTTATCC‑GCCCCCACGGGGGGGGTATTGTAGGCCCGGGGAAAGTGGGGCCCA‑TCGGACAAAATT‑GCCCGAGGTAAACGGTTTTAATTTTTTAAGgaagggaagg > 2:232938/1‑239 (MQ=255) tACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTCTTTTTATCGGCACGGTGCGGGGTGCGTTGTCGGGGGTGCTTCGCTTTTCC‑GACCTACCGGGGGGGGTTTTGTAGGCGCGCGCAACGCGGTG‑CCA‑TCGGGCACAATTAGCCCGGGGGAACAGGTTTTTTTTATTTGAAGAAGGGagag > 2:777848/1‑236 (MQ=255) tACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGGTTTTTTATGGGCACGGTGCGGGGGGAGTTGTCGGGTGCGCTTCGCTTATCC‑GGCCTACAGGGGAGGATATTGTAGGCCCCGTAAACGTGGGG‑CCA‑ACGGGCAAAATTAGATCGGGGTAACAGGGTTTGATTATTTAAGaaatggtcct > 2:52031/1‑232 (MQ=255) tACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAAATTTAGTTCACCTAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGCGAGTTTTCGGCTGGGCCTCGCCTATCCGGACCAACA‑GGGAGGATATTTTAGGCCCGGTCAACGTGGTG‑GCACTCGGCGAAATTTACCGCGG‑GTAAACGGTTTTGTTTTTTTAAGGAAGCggggg > 2:731739/1‑235 (MQ=255) tACCGGGGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGAtg < 1:884447/238‑1 (MQ=255) aCCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCt < 1:191758/201‑1 (MQ=255) cGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGAtggtgg < 1:232938/239‑1 (MQ=255) gggtgggTATTTGACACGTAAGTTCCAGCTGGTGCGCGCTAGTCACTAAGGGAATTTTAGTTGGCATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGAtggtggt < 2:23639/233‑1 (MQ=255) gtttctgcaccGTTAGTACCCGCTGGTGCGCGCTCGGTATTAAGGGAATTTTAGTTCACATAGGCCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTggggg < 2:252787/228‑1 (MQ=255) gTATCTGACAGGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTggggg < 1:631088/238‑1 (MQ=255) cTGACACGTAAGTCCCAGCTGGGGCGCTGGCGTCCCTAAGTGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGa < 1:6885/239‑1 (MQ=255) gTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGGTTTGATTATTTAAGGAAGCGCTGGGGGTGGGGGAAGGGTTACTCa > 1:576086/1‑239 (MQ=255) tGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCCCGGTGCGGGGGGAGTTGTCGGGTGCGCTTCGCTTTTCC‑GCCCTCCAGGGGGGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCACAATTAGACCGGGGTAACCGGTTTTGATTATTTAAAGAAGGGGTGGTGGTGGGGGGAGGAGTTATCAGCGCcgcgcggtcg > 2:209370/1‑234 (MQ=255) gtCGTCCCTAAGCGAATTTTAGTTCCCATAGGCCCTGATTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc < 1:605451/238‑1 (MQ=255) gAATTTTAGTTCACATGGACCCTTCTTCGGC‑GGGTTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGcc < 1:506148/237‑1 (MQ=255) gtCACATAGGCCCTGCTTCGGC‑GGGGTTTTTTTAGGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGc < 2:696775/238‑1 (MQ=255) tGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGGTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACCCTCTCTCGCTGgc > 1:512163/1‑238 (MQ=255) gCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGa > 1:521045/1‑142 (MQ=255) gCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGa < 2:521045/142‑1 (MQ=255) ggc‑ggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAg < 1:209370/239‑1 (MQ=255) gTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGGTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTTCGGCCACGCCCTCTCCCTGGCCCCCAAGTCGaa > 1:6513/1‑238 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAAc < 1:557829/238‑1 (MQ=255) taggggCACGGTGGGGGGGGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTc < 1:441219/236‑1 (MQ=255) aGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGa < 1:858761/120‑1 (MQ=255) aGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGa > 2:858761/1‑120 (MQ=255) tggcGGATGCGCTTGTCTTTTGC‑GACCTACAGGGGAGGATTTTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCGCGGAGTAACTGGTTTGGATTATTGAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc < 2:691956/235‑1 (MQ=21) tGTCGGGTTGGCTTCGCTTTTCC‑GACCGACAGGGGAGGGTTTTGTTGGCCCGGTAAACGGGGTG‑GCA‑GCGGGAAAAATTGGCTCGGAGTAACGGGTTTTGATTTTTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc < 2:585404/238‑1 (MQ=18) ggtctcgcttcgtttATCC‑GGCGTAGAGGGGAGGATTTGGTAGGCCTGGTTAACGTTGTG‑CCA‑TCGGGCAATATTAGCTCGGAGTAACAGGTTTGTATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTggg < 2:250809/234‑1 (MQ=21) tGCGCTTGGCTTATCC‑GACCTAAGGGGGGTGATTTTGGAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCa < 1:908161/238‑1 (MQ=255) tGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCGGGTAAAGGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCa < 1:410381/238‑1 (MQ=255) tGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGGACCTTGGTCGAAACTTCTCATCCTTCCCCGCTTGGGCAg > 1:585404/1‑239 (MQ=255) tGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAg > 1:133795/1‑239 (MQ=255) cgcttcgcttATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGTCCGTTGCCTGCGGCAACGCCCTCTCGCTGGCGCTCAAGTCGAACCTTGGCCGAACCTTTCCTTCCTTCCCCCCTTTGGCGGag > 1:202456/1‑238 (MQ=25) | CGATGGTGTGGCGTTTATCTTCCGTCTGCACCTGGTGCTGGGGATGACGTTATTCCTGCTGTTCCCGTTCTCGCGTCTGATACACATCTGGAGCGTACCGGTGGAGTATCTGACACGTAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCC‑GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTG‑CCA‑TCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAA > NC_000913/1286379‑1286840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |