| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,001,389 | G→A | 5.4% | intergenic (‑333/‑37) | yigE ← / → corA | DUF2233 family protein/magnesium/nickel/cobalt transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,001,389 | 0 | G | A | 5.4% | 231.6 / 3.5 | 77 | intergenic (‑333/‑37) | yigE/corA | DUF2233 family protein/magnesium/nickel/cobalt transporter |
| Reads supporting (aligned to +/- strand): ref base G (39/33); new base A (2/2); total (41/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.57e-01 | |||||||||||
CGTGTTGACGGCAAAATTTTGCTGGCGTAACATGCGCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTG > NC_000913/4001153‑4001624 | cGTTTTGACGGAAAATTTTTTCGGGCTTAACTTGCGGGACAGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGaa < 2:572288/239‑1 (MQ=255) ctgtTGACGGCAAAATTTTGCTGGCGTAACATGCCCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGaa < 1:479896/237‑1 (MQ=255) tgtTGACGGCAAAATTTTGCTGGCGTAACATGCGCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTACGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGCAAGCTACCTCAATTTTTCCCTTCCCGC‑TGCGTCAGGCTGTTTAAGTGTCTGAAACCCAATTTTGTTCGTTGTGCCAA‑CCGa > 2:308349/1‑236 (MQ=255) tgtTGACGGCAAAATTTTGCTGGCGTAACATGCGCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGGGTCAGGCTGTTTAATGGGCTGAAACCCAATTTGTTTCTTTGTGCCAC‑CCGa > 1:299272/1‑236 (MQ=255) ccgCAAAATTTTGCTGGCGTAACATGCGCGCACGATCACTCTAAGAGGACATTCGCCTGGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCg < 1:184970/236‑1 (MQ=255) cGGCAAAATTTTGCTGGCGTAACCTGCGCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCg < 1:772256/238‑1 (MQ=255) cGGCAAAAGTTTGGTTGCGTAACATGCGCGACCGATCCCTCTAAGAGGACATTCGCCTGGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCg < 1:829545/238‑1 (MQ=255) aaTTTTGCTGGCGTAACCTGCGCGCACGATCCCTTTAAGAGGCCATTCGCCTTGGACACCCCCAGTAGATACTGGCTCTCTATCCTGTCATCCAGGATCAACTCCGAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATAtttt < 2:151364/239‑1 (MQ=255) aaTTTTGCTGGCGTAACATGCGCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCTCTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATAtttt < 1:132958/239‑1 (MQ=255) aTTTTGCTGGCGTAACAGGCGCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTa < 1:308349/239‑1 (MQ=255) ggccgaaCAGGCCCGCACGATCCCTCTAAGAGGACATTCGCCGTGGACACACCCAGTGGATCCTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTAGCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGGGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGTCTGTTTAATGTTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTgg < 1:573811/234‑1 (MQ=255) taggggACTTTCGGCTTTGACCCCCCCAGTACATTCTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTc < 2:812507/235‑1 (MQ=255) aaGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTc < 1:371279/239‑1 (MQ=255) agagGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTCTCCTGTCATCCAGGAACAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGGGTCTGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCC‑CCGAACTGTCCGATATTTTATGCCTTGGGAGTCCCGGTCATGCTGAGCGCATTTCa > 1:273455/1‑239 (MQ=255) agagGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCCCATTTCa > 2:394858/1‑239 (MQ=255) gACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGt > 2:531278/1‑211 (MQ=255) gACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGt < 1:531278/211‑1 (MQ=255) cATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TTAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCC‑CCGAACTGTCCGATATTTTAACAATTGGGAGTCCCGGTCATGCTGAGCGCATTTAAAATGGa > 2:130575/1‑239 (MQ=255) cATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGa > 1:792148/1‑239 (MQ=255) aTTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGa < 1:443538/238‑1 (MQ=255) ggACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCg > 1:177812/1‑238 (MQ=255) acCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGAcc < 1:553323/239‑1 (MQ=255) gTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCg > 1:20858/1‑236 (MQ=255) tACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGTTATTTTAAGCCTTGGAGTTCCCGGCACTGCTTAGGCAATTTAAACTGGAAAATAACCGAAGGCCCCGGCTGAAAg > 1:249533/1‑239 (MQ=255) tACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGGGCGCATTTCAACTGGGAAAAAACCGACTGACCCGGCGGGAAg > 2:533071/1‑239 (MQ=255) aCTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTTGGTGCCCA‑CCGAACTGTCCGGTATTTTATGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACGGACGGACCCGGCTGGAAgg > 2:791625/1‑238 (MQ=255) aCTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCCTTGTGAGTCCAGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAg > 1:887527/1‑238 (MQ=255) aCTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGATTCCCGGTCATGCTGAGCGCAttt > 2:71612/1‑204 (MQ=255) aCTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCAttt < 1:71612/204‑1 (MQ=255) cTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTATCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCCTTGGGAGTCCCGGTCATGCTGACCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGt > 2:354592/1‑238 (MQ=255) ggCTTACTTTCCTTTCATCCAGGTTCAACCCCTAAGGTTTTCCCTTTGTTGTGTTAGCCTTAGCGGTTGTCAGCGACCCTAATTTTTCCCGTTGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGGTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGa < 2:299272/239‑1 (MQ=255) cTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCCTTGGGAGTCCCGGTCATGCTGAGCGCATTTTAACTGGAAAATAAACGACTGCCCCGGCTGGAAGTCGaaa > 2:638853/1‑238 (MQ=255) cTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGGGCGCATTTCAACTGGAAAAAAACAGACTTACCCGGCCGGAAGACGAag > 2:761703/1‑239 (MQ=255) aCTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGGAACCCAATTTGCTTCTGTGTGCCCC‑CCGAACTGTCCGATATTTTACGCATTGGGAGTCTCGGTCATCCTGAGCGCATTTCAACTGGAAAATAAATGCCTGACCCGGCTGGAAGGCGAagag > 1:432846/1‑238 (MQ=255) aTCCTGTCATCCAGGATCAACTCCTAAGGCTTTCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTcac < 1:130575/239‑1 (MQ=255) cTGTCATCCCGGATCAACTCCTAAGGCTAGCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAAc < 1:899588/239‑1 (MQ=255) gacATCCCGGATCGCCTCCTAAGGTTTTCCCTGTTTGCTGATAGCTTGAGCGGTTGTCAGGGGCCGCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTATTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCG‑TCGAACTGTCCGATATTGTAAGCATGGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAAccc < 2:273455/237‑1 (MQ=255) cttCCAGGATCACCTCCTAAGGCTTTCCTTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGGGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCt < 2:579082/237‑1 (MQ=255) cATCCCGGATCAACTCCTAAGGCTATCCCTTTTTGCTGAAAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCt < 1:297407/239‑1 (MQ=255) tCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTg > 1:543775/1‑239 (MQ=255) cAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTa > 1:466432/1‑239 (MQ=255) ggATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGGCTGACCCGGCTGGAAGTCGAGGAGTCAAAACCCCTTGTaaa > 1:880327/1‑239 (MQ=255) gATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAgcgc > 1:463994/1‑175 (MQ=255) gATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTAAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAgcgc < 2:463994/175‑1 (MQ=255) aTCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGGCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAAt < 1:486606/238‑1 (MQ=255) accccTCAGGTTTTCCCTTTTTGCTGTGAGCCTGGCGGGTTGTCAGGGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGGGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGt < 2:466432/236‑1 (MQ=255) aCTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGt < 1:640557/239‑1 (MQ=255) tAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGAATGGa > 1:571247/1‑239 (MQ=255) aaGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAAAGGCACAACCCCTTGGAAATCCAGAAAGGAt > 2:299740/1‑239 (MQ=255) aGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAATCGAAGAGTCACCACCCCTTGTAAATGCAGTATGGttt > 1:718062/1‑239 (MQ=255) aTCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGTGCGCATTTCAACTGGTAAATAACCGACTGCCCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCt > 1:628341/1‑239 (MQ=255) aTCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAAACGACTGACCCGGCTGGAAGGCGAAGAGTCACAACCCCTTTTAAATGCAGTAAGGAATGAtat > 2:851941/1‑237 (MQ=255) aTCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCAAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCCCAACCCCTTGTAAATGCAGAATGGATTGATCt > 1:133549/1‑239 (MQ=255) tCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTgg < 2:700027/135‑1 (MQ=255) tCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTgg > 1:700027/1‑135 (MQ=255) tCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGCCGAAGAGTCACAACCCCTTGTAAATGCAGGATGGATTgttatt > 2:236232/1‑234 (MQ=255) cccTTTTTGCTGATAGCCTTTGGGGTTGTCAGCGACCTCAATTTTTACCGTCCGGT‑TGAGTCAGGCTGTTTAATGGTCTGAACCCCAATTTGTTTCTGTGTGCCAA‑CCGAACTGTCCGATATTTTAAGCATTGGGATTCCCGGTCATGCTGAGCACATTTCAACTGGAAAGTAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTg < 1:135124/239‑1 (MQ=255) tttgcctcttcccTTACTGGTTGGCAGTGGCCCCAATTGTTTCCTGCGCGCGTGTGT‑AGTCTGTTTAATGGACTGAACCCCAATTTTTTGCTG‑GTGGCCACCCCGACTGTCCGATATTTTATGCATTGGGAGTCCCGGTCATGCTGACCGCATTTCAACGGGAAAATAAGCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGaa < 2:466064/228‑1 (MQ=255) tttGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTTCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGGAAATAACCGACTGACCAGGCTGGAAGTCGGAAAGCCACAACCCCTTGAAACAGCAGTAGGGATTGACCttttgaa > 2:575794/1‑233 (MQ=255) tttGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAA‑TTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCCCAACCCCTTGTAAATGCAGTATGGAt > 1:346410/1‑225 (MQ=255) gATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGCCTGACCCGGCTGGAAGTCGAAGAGCCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGgac > 1:160879/1‑239 (MQ=255) aGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAACTAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATTTTTTCGAACCGGAGGCCGAagag > 2:768637/1‑239 (MQ=255) gACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGGTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTa < 1:236232/238‑1 (MQ=255) caCCTTAATTTTTCCCGTCGCGC‑TGAGGCAGGCTTTTTAATGGTCCGAAACCCAATTTGTTTCTGTGGGCCCA‑CCGAACTGGCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTGCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTa < 2:269225/237‑1 (MQ=255) ccTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGTAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGCCTGCGGGTACaa > 1:566407/1‑239 (MQ=255) ccaaaattttCCCGTTGGGC‑TGAGTCAGGCTTTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAAt < 2:792148/233‑1 (MQ=255) ttttCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGGCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAAc < 1:127481/239‑1 (MQ=255) gTCGCGC‑TGAGTCAGGCTGTTTAATGGACTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCAAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAGTAACCGACTGACACGGCTGGAGGTCGACGAGTCACAACCCCTTGTCAATGCAGTATGGATTGATCTTTTCCAACCGGAAGACGACGAACGACTGCGCGCAAAACCTAAAATTggacc > 2:151187/1‑236 (MQ=255) tttAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCAAAAGCCTGGCAAaccgcccg > 2:399562/1‑239 (MQ=255) aattgttttaaaCCCAATTTTTTTCTGTGTGCCCC‑CCAAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGaa < 2:133549/230‑1 (MQ=255) tGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAAAGCCTGGCAACCCGCCCGGAACTGGAAg > 1:655341/1‑239 (MQ=255) cacaTTTGTTTCTGTGTGCCAA‑CCGAACTGTCCGAAAGTATAAGCATTGGGAGTCCCGGTCATGCTGAGCACATTTCCACTGGAAAATAACCGACTGCCCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTTCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCg < 1:411982/236‑1 (MQ=255) aaTTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGaa > 1:721493/1‑239 (MQ=255) tCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACACTCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAGGACATCGAAGCATCgg > 1:718852/1‑238 (MQ=255) tCTGGGTCCCCC‑CCGAGATGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGGCGAAGAGTCACACCCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGc < 2:20858/239‑1 (MQ=255) tgtgCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGCTTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCAGCCCGGAACTGGAAGACATCGAAGCATCggaccgt > 1:828578/1‑234 (MQ=255) a‑CCAAACTGTCCGATATTTTAAGCAGTGGGATGCCCGGTCATGCTGAGCGCATTTCAACCGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTg < 1:151187/239‑1 (MQ=255) | CGTGTTGACGGCAAAATTTTGCTGGCGTAACATGCGCGCACGATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGC‑TGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCA‑CCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTG > NC_000913/4001153‑4001624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |