| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,359,249 | A→C | 17.5% | S261R (AGT→AGG) | cadB ← | putative lysine/cadaverine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,359,249 | 0 | A | C | 17.5% | 168.8 / 5.2 | 79 | S261R (AGT→AGG) | cadB | putative lysine/cadaverine transporter |
| Reads supporting (aligned to +/- strand): ref base A (35/27); new base C (4/12); total (39/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.75e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGT > NC_000913/4359011‑4359485 | tatgcaggtgtaTAAGGTTCAGCAGGGCAGTCATTTTCCCTGACGCCAGCAGCAGACCTTTTTT‑CGG‑AATTCCGTTGCTGCCGCCTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCa < 2:270490/228‑1 (MQ=255) catcaGAGTGATAAGGGTCTTCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTG‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCAc < 2:747806/239‑1 (MQ=255) aacatagTGTTAAGGTTCCTCAGGGCGTTCATTTTCACTGCGGCTAGCAGCAGACCTTTTTTCCGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTCCACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCAc < 2:255556/234‑1 (MQ=255) agTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTg > 1:383470/1‑239 (MQ=255) tGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGACCTGATTGCa > 1:105532/1‑239 (MQ=255) tGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGGG‑AATGCAGAAACCAGCGGCCCAGCCCAGGTACC‑CAGGATAGTTGAAGACCGGATTGCa > 2:95665/1‑239 (MQ=255) tGATAAGGATCATCAGGGCAGTCATTTACACTGCAGGCAGCAGCAGGCCTTGTTT‑CGG‑AATGCCGTTGGTGTCGACTTCACCAT‑AATCTTGCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGc < 1:376859/238‑1 (MQ=255) atcatcAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCCGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAACCCCATTAAC‑GGGGAAAGTTGAAAACCAGATGGCAAACgggga > 2:117438/1‑236 (MQ=255) atcatcAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑ATTGAAGAAACCAGCGCCGCAGCCCAGTTACC‑GAGGCTAGTTGAAGAACTGATTGCAAACGGAg > 1:353003/1‑238 (MQ=255) catcaGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCCGTTACC‑GAGGATAGTTTAAGCACTCATTGCACACGGAGCa > 1:846494/1‑238 (MQ=255) catcaGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGAACTGATTGCAAACGGTGCa > 1:201905/1‑238 (MQ=255) tcaGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCg > 1:284827/1‑239 (MQ=255) ggCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCCCGCAAAGGCGGTG‑AATGCAAAAACCAGAGGCGAAGCCCCATTACC‑GAGGAAAGTTGAAACCCGAGTTGCAAAAGGGGCACCGGaa > 2:280503/1‑238 (MQ=255) gtttttttttCCCTGCCCCCCGCCGCACACTTTTTTT‑GGG‑ACTCCGGTTGCTGTCCACTTC‑CCATAAAACTGACGGGAAGTTACCGTTGTTAGCGGCACGACCCCCTTCCTGGCCTACCAACATCACCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAACCCAGCGGCGCAGCCCAGTTCCC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAgc < 2:304077/232‑1 (MQ=255) cAGTCATTTTCCCGGCAGCCAGCAGCAGACCTTTTTG‑CGG‑AATCCCGTTGCTGTCGCCTGCACCAT‑AAACTTGCGGGAAGTTACCGGCGTTAGCGGCACGTACCCCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAgc < 1:322416/238‑1 (MQ=255) aGTCATTTTCCCTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATCCCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAgcc < 1:221018/238‑1 (MQ=255) gtttttttCCCTTCCGCCCGCAGCAGTCTTTTTTT‑GTG‑AATCCCGTTGCGGTCGATTTCACCAA‑AACCTTTCGGGAAGTTCCCGTCGTTAGCGGCACGTACCCCGGCCTGGCCTACAACCATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AAGGCAGAACCCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCCCTGATTGCAAACGGAGCACCGGAAgccgc < 2:24001/235‑1 (MQ=255) gTCATTTTCCCTGCAGCCAGCAGCAGCCCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTCCACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCCCTGATTGCAAACGGAGCCCCGGAAgccgc < 1:902869/239‑1 (MQ=255) tCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGAGAGTTGAAGCACTGATTGCAAAAGGAGAAACGGAAaccgca > 2:782006/1‑238 (MQ=255) tttCCCGGCACCCAGCAGCAGCCCTTTTTT‑GGG‑AATCCCGTTGGTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCGGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTa < 1:95665/239‑1 (MQ=255) tGCAGCCAGCAGCAGACATTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCCCCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCCGAGAAGTCAGGCACGCAAAGTAGGTG‑AATGGAGAAACCAGCGGCTCGGCCCAGTAACC‑GAGAATAGGTGAGAAACGAAATGAAAAAGGAGCAACGGAAGCGGCAAATAAagaaa > 2:458807/1‑238 (MQ=255) cacccccctccTTTTTT‑CGGAAATCCCTTTGCTTTCGCTTTCCCAAT‑AAACTTCGGGAAATTTACCGTCGTTAGCGGCACGTCCCCCTGCCTGGCCTACCAACATAAACCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAAAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGAAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGat < 2:383470/230‑1 (MQ=255) agcagcagACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGGGCACCGGAAGCCGCCATTAAAAAAGCAGGata > 2:885269/1‑239 (MQ=255) cTGTCGGCTTCACCAT‑AAACTTTCGGGAAGTTCCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAAGCACGCGACGGCGGTG‑AATGCAGAAACCAGCGGCCAAGACCAGGAAAC‑TAGGAGAGTTGAAGCACTACTTTCAAACGACCAACTGGAATCCGCCATTTAGTGAGACGGCTACAAACCAGGAAACACCTGAGGCGCAGCGAt > 2:899489/1‑239 (MQ=255) tCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGAACTGATTGCCAACGGAGCACCGGAAGCCGCCATTACAGCAGAAGGAACAATACCGGAAAGCACCTGAGCCCCAACGATgaa > 2:177551/1‑237 (MQ=255) aaaccTTGCGGGAATGTACCGTTCTTAGCGGCACGTCACCCTGCCTGGCCTACCAACACCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCCCTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGc < 1:209640/235‑1 (MQ=255) accTTCCGGGAATTTACCGTCGTTAGCGGCACGGCCCCCGGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCAAGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTa < 1:714131/237‑1 (MQ=255) cGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCACAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAACCACTGCTTGCAAACGGAGCACCGGAAGCCGCCATTACAGAATACGGATACATACCGGAAAGCACCTGAGCCGCAGCGATGTAACCAATACCTACTAAACCAg > 1:676002/1‑239 (MQ=255) cccctctttAGCGGCCCGTCCCCCTGCCTGGCCTACCAACAACATCCAGGACCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAACCCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGAAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCa < 2:284827/232‑1 (MQ=255) ctgtccccctgccggGCCACCCAACATCACCCAGGGCCACAGGGAAGT‑AGGGCCGGAAAAGGGGTGAAATGCAGAAACCAGGGGAGCAGCCCATTTTCC‑GAGGATAGTGGAAGCCCGGTTGGCAAACGGGGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGa < 2:656449/231‑1 (MQ=255) cGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGacc > 1:165193/1‑237 (MQ=255) tgcctgGCATCCCAACAACACCCAGGAGCCAAGAAAAGTCGGGCACGAAAGGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCGGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGtt < 1:864368/239‑1 (MQ=255) gcctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGCTTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCCGAATCCCAGCGATGTAAACAATACCCGCTAAACCAAAACCCACCAAGGTAGCCAGCGGAACGGTaaattt > 2:213673/1‑234 (MQ=255) cctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTc > 1:777815/1‑239 (MQ=255) ctgGCCTACCAACATCATCCAGGGCCCCAGAGAAGCCAGGCACGCAAAGGCGGTG‑AAGGCAAAAACCAGCGGCGAAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTc < 1:487741/238‑1 (MQ=255) ctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGAt > 2:482477/1‑180 (MQ=255) ctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGAt < 1:482477/180‑1 (MQ=255) ctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAAACGGATACATACCGGAAAGGACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGAACCCACCAAGGCTGCCAGGCGAACGGGACCttcgg > 2:180106/1‑236 (MQ=255) tgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAAc > 1:619927/1‑199 (MQ=255) cTACCAACCACCACCAGGATGCGAGAGAAGCCAGGCACGCAAGGGCGGTG‑AATGCAGAACCCAGCGGCCCAGCCCAGTAACC‑GAGGATAGTTGAAGCCCGGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCCCCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGttt < 1:108007/239‑1 (MQ=255) tACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGgttt > 1:80895/1‑239 (MQ=255) catcctCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCa < 1:885269/239‑1 (MQ=255) tcatcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTGGCCAGCGGAACGGGAAGTTTCGGGTTTTTAACCAt > 2:749216/1‑238 (MQ=255) tcCAGGAGCCCAGAGAAGTCAGGCACGCAAGGGCGGTG‑AATGCAGAACCCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCa < 1:280503/239‑1 (MQ=255) tcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTg > 1:657537/1‑89 (MQ=255) tcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTg < 2:657537/89‑1 (MQ=255) ccAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGAATACATACCGGAAAGCACCTGAGTCGCAGCGATGTACACAATACCTGCTAAACCAGTACCCAGCATGGGTGCCAGCGGCACGGGACAGTTACGGTTTTTAACCaaaacac > 2:131950/1‑233 (MQ=255) cAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACagaa < 1:84404/115‑1 (MQ=255) cAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACagaa > 2:84404/1‑115 (MQ=255) gaAGTCAGGCCGGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCCCTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTg < 1:210446/238‑1 (MQ=255) aaGTCAGGCACGCAAGGGCGGTG‑AATGCAAAAACCAGCAGCGCGCCCCGGTTACG‑GTGGGTGTTGGAACCCCTGAGTGAAACGGGAGGCCCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCGGAGTCGCAGCGATGTAAACAATCCCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGc < 2:29066/238‑1 (MQ=255) tCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCgggt > 1:292271/1‑237 (MQ=255) ggCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGAGGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGGTTCGGGGTTTTAACCATACCAGAACTTACAGCCGAGGAttaa > 2:222904/1‑237 (MQ=255) cGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAaca > 2:580887/1‑238 (MQ=255) cAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGAACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCAAACAAGTACTTAAAGCTGCGGATTAAaaacac > 2:877382/1‑237 (MQ=255) cGGTA‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGaa < 1:711980/238‑1 (MQ=255) tG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTAAACACCCACAAAAGcc > 2:159590/1‑239 (MQ=255) agaatgcAGCGGCCACGCCCAGTTATG‑TAGGATAGTTGAACCACTGATTGCAAACGCAGCACTGGAAGCCGCACTCTCAAAAGACGGATACATCCCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAgg < 1:458807/232‑1 (MQ=255) aaaaaCCAGGGGCCCAGCCCAGTTACC‑GAGGAAAGTTGAAGCCTTGATTGAAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATGCCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAgg < 1:177551/236‑1 (MQ=255) aGAACCCAGCGGCGCAGCCCAGTGACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGACCCCCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAgg < 1:159590/238‑1 (MQ=255) aaccccggcggcgCACCCCGTTTACC‑GGGGAAATTGAAAGCCCTGAGTGCAAACGGAGCCCCGAAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGgca < 2:292271/232‑1 (MQ=255) aaaaCCAGGGGCGGAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGAATGCAAACGGAGCCCCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGgca < 1:69325/238‑1 (MQ=255) aaaCCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGgcag > 1:814273/1‑239 (MQ=255) aaCCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATCCACACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCACGGTTCCCAGCGGAACGGTACGTTTCGGGTGTTTAACACTACCAATACTTCAAGCTGCGGATTCACAACCCACAAAGAccccaagggaag > 2:114438/1‑230 (MQ=255) cggcgACGCCCAGTACCC‑GAGGATAGTTGAGGCACTGATTGCAAACGGAGCAGCGGAAGCCGCCATTACAGAAGTCGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGTATTCAACACCCCCGAAGGCCCACAGGCAGAGCAGaa < 1:131950/239‑1 (MQ=255) ggggcAGGCCACTTTCCGGAGGATAGTGAAACTCCTGATGGAAACCGGAAACCCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGaa < 2:777815/236‑1 (MQ=255) ggcgCAGGCCAGTTACC‑GAAGATAGTTAGAGCCTTGTATTCAAAGGTGACGCCAGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGGCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGaa < 1:238406/238‑1 (MQ=255) ggccgcgCCTAGTTACC‑GAGGATAGTTGAAGCACTGCTTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGaa < 1:254579/232‑1 (MQ=255) cAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGAACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCCGAGCAGAATACtt > 1:529328/1‑239 (MQ=255) tACC‑GAGGATAGTTGAAACACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGAt < 1:749216/238‑1 (MQ=255) gAGTATAGTGAAAGCGCGGATTGAAAACGGAGCACCGG‑AGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATg < 1:312117/239‑1 (MQ=255) gAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCGAAGCAGAATACTTTTAATGATCGctt > 1:674831/1‑237 (MQ=255) gAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGAACTTACAGCTGCGGATTCAACCCCAACCAAGGCCCACAGGCAAACCAAAAAAATTTTAAtaaaaccat > 2:19600/1‑231 (MQ=255) gggtgtgTTGAAGCAGTGGTGGCAAAGGGGGCACCGGAACCCGCCATTACAGAAGGCGGATACATCCCCGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATg < 2:676002/233‑1 (MQ=255) acagaGTTGAAGCCTTGTTTGACAACGGACCCCCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATCCCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATg < 2:255691/234‑1 (MQ=255) gATAGTTGAAGCACTGATTGCAAACGGAGCACCGG‑AGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAAAGCAGAAAACTTTTAATGATCGCCTGAca > 2:312117/1‑238 (MQ=255) atcgtggAAGCAATTGTTCCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGAc < 1:227264/232‑1 (MQ=255) tgTTGAACCATTGATTGCAAAAGGAGCACGGGAAGCCGCCATCACAGAAGACGGATACATACCGGAAAGCCCCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCAt < 2:893806/238‑1 (MQ=255) aGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTCCAGCTGCGGATTCAACCCCCACGAAGGCCCACACGCAGCGCAAAAAACTTTTCATGAACCCAGGACACTCAGTgg > 2:218829/1‑239 (MQ=255) cACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAACAGAAAAATTTTAATAAACGCATGACAAACAGAggg > 2:323875/1‑237 (MQ=255) | TCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTT‑CGG‑AATACCGTTGCTGTCGACTTCACCAT‑AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTG‑AATGCAGAAACCAGCGGCGCAGCCCAGTTACC‑GAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGACGGATACATACCGGAAAGCACCTGAGTCGCAGCGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGT > NC_000913/4359011‑4359485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |