| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,606,902 | A→G | 21.7% | S267P (TCC→CCC) | rsmC ← | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,606,902 | 0 | A | G | 21.7% | 126.5 / 5.8 | 60 | S267P (TCC→CCC) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (8/37); new base G (11/3); total (20/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTT > NC_000913/4606665‑4607125 | aTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑Ggag < 1:717120/239‑1 (MQ=255) ttcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCCTCGTGGAACGCCGGGTC‑GGGGGTGATCaaatt > 1:796078/1‑238 (MQ=255) tccccgcgggggTTATAATGGCGCGATACCCCGTGAAGCGCCCTTTTTGCGCGATCCTCTCGTGGAATCCAAATGTCTCACCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑aaaa < 2:903560/230‑1 (MQ=255) ccTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCCCATCCAGGCTGGTTTGCATCCCACCGGGGAACGGCGGGGG‑GGGGAGGATAATATA‑aaaaaa > 2:619537/1‑236 (MQ=255) gcgcGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCAGATC‑AAAACAACCTTT‑CACCC‑CGG‑aaaa > 1:781463/1‑239 (MQ=255) cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCCCCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGG‑GGGGAGGGGCATATC‑AAAAAAACCTTT‑TCCCC‑CGG‑gaaaa > 2:879021/1‑238 (MQ=255) tACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGGGGGTT‑GGGGGTGGTACTATC‑AAAAAGACCTTT‑CAACC‑CGG‑aaaaaagggt > 2:259217/1‑233 (MQ=255) ttaaGCGCCCTTTTGGGGCGATCCGTTCGGGGAGGCCAAATTTCTCCTCCAGCACGGCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCa < 2:767885/237‑1 (MQ=255) tGAAGCGCCCTGTTTGCGCGACCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGGCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGAGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCa < 1:818942/239‑1 (MQ=255) aGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGGTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGACCGGCGGGTT‑GGAGATGCTCATATC‑AAAAAGACCTTT‑AACCT‑CGG‑CAAAAACGTTTCTGGCACAg > 1:771385/1‑239 (MQ=255) ccggTTTGCGCGTTCACTTCGTGGAAGCCAAATGTCTCACCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTc < 1:768416/236‑1 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGAT‑TGGGATGATCACATC‑ACAACGACCTTTCCACCT‑GGG‑AAAA‑ACGTTGCCGGCaaaagcct > 1:103708/1‑233 (MQ=255) gTTTGCGCGATCACGTCGTGGAAGCCAAATGTCTCATCCAGCCCGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTGGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCAcc < 1:19099/239‑1 (MQ=255) ttGCGCGATCACTTCGTGGAAGCCAAAGTGCTCATCCAGCACGGCCGGATAAGGCAGGAAGGCGTTCGCTACAAGTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCtt < 1:136656/239‑1 (MQ=255) cTTCGTTGAACCCAAATTTCTCACCCAGCCCGTCCGGATAAGGCCGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTg < 2:781463/239‑1 (MQ=255) tCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGc < 1:59518/239‑1 (MQ=255) tGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGc < 1:325418/239‑1 (MQ=255) ggAAGCCAAATGTCACATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGc < 1:848066/238‑1 (MQ=255) aGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGCTGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCACCGTGGAACGGCGGGCT‑GG‑GTGGGGGATTTCAAAAACGCCCCAT‑CACCT‑CGG‑GAAAACCGCTGTTGGCGACAACTTCACCCTC‑AACACCCTTGGCCGCaaag > 2:714456/1‑237 (MQ=255) ccAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGGGATGGTCATATC‑AAAACGCCCTTT‑CTCCC‑CCG‑AAAAAACGTTGTTGGCGAAAACTTTACCCTC‑AACACCGTTGGCCGccacggt > 1:791776/1‑233 (MQ=255) aTGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTgcg < 1:619537/239‑1 (MQ=255) cttctCCAGCACGGCCGGAAAAGGCAGGAAGGCGTTCGGTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCgg < 1:750849/234‑1 (MQ=255) ctcATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCCCTAAAATTCGCAGCTCGGCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCgg < 1:744512/238‑1 (MQ=255) cACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGT‑GGGCATGATCAAATC‑ACAACAACCTTT‑CACCT‑CGGCAAAACAC‑TGGCTGGCAAAGACTTCACCTTC‑AAAACCCATCACCCCAAGGGTTGCCCggcggggcttca > 2:155404/1‑233 (MQ=255) ccGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGGGATGATCATATC‑TAAAAGACCTTT‑CCCCT‑CGG‑AAAAAACGTTGCGGGCCAAAACTTTACCCTCAAACACC‑TTGGCCGCAAGCGGTGGGGGGCTGGG‑TTCTAccgcc > 2:92618/1‑239 (MQ=255) acGGATAAGGCAGGAAGGCGTTCGCTACAATCCCCAGCCCCCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTAccgc < 1:816279/237‑1 (MQ=255) aaGGCAGGAAGGCTGTCGCTACAATTCGCAGCTCGCCGCCGCTATGAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCG‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCa < 1:664736/239‑1 (MQ=255) aGGGAGGAAGGCGTTCGCTACAATTCGCACGTCGCCGCCGCTATTAAGATGCCGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCag < 1:496301/239‑1 (MQ=255) ggAAGGCGTTCGTTACAATTCGCAGCTCGGCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑Ac < 1:455271/238‑1 (MQ=255) aaGGCGTTCGGTTCAATTCGCAGGCCGCCGCCGATATTAAGATGACGCACCGCACCGCGAATCCGCGTTTGCACCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACAt < 1:833453/238‑1 (MQ=255) cGTTCGCTACAATTCCCAGTCCGCCGCCGGTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGca < 1:795044/238‑1 (MQ=255) ccgccgcTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑Ga < 1:607860/239‑1 (MQ=255) cgcTATTAAGGTGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATgg < 1:714456/239‑1 (MQ=255) cgcTATTAAGATGGCGCACCGGACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATgg < 1:22154/239‑1 (MQ=255) tATTAAGATGACGCCCCGCACCGGGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTc < 1:53156/227‑1 (MQ=255) tAAGCTGACCCCCCGCACCGTGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑a < 1:273453/239‑1 (MQ=255) tgccgcaccgcccCGGGAATCAGCGTTTGCGCCGCCTCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGGCGTTGCTGGCAAAGACTTCACCGTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGc < 1:801521/236‑1 (MQ=255) aCGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑GACCT‑CGG‑AAAAGACGGTTCTGGCAAAGACTTCACCTTC‑CAAACCGATGGGCGCAAGAGGTGCGGGGCTGACGTTTCACCCCCGGGCCAAAGCACATC‑C‑CAAGGGGAGAGG‑GATTTTTGGCAGAAGGGGGCG‑C‑aaaaca > 2:742273/1‑235 (MQ=255) gcaccgcaccGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGACCGGCGGGGT‑TGAGATTAACATATC‑AAAACGAACCTT‑CCCCTCCGG‑AAAAACCGTTCCGGGCAAA‑ACTTCAACCTC‑AACACCCTTGGCCGCCAAGGTTGCGCGGCCGGC‑CTCTAACGCCGGGGCCAAG‑ACATTCCCCAAGGGGGGCCGAAACTTTCGG‑‑GCACGGCGCG‑CAAAAGGCAAc > 2:200774/1‑239 (MQ=255) gcaccgaGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGGGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAg < 1:667935/239‑1 (MQ=255) gAATCCGCGTTTGCGCCGCATCCAGGCTTGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGcc < 1:852588/238‑1 (MQ=255) aTCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGGGATGATCATATC‑AAAAAGACCTTT‑CACCT‑CGG‑AAAAGACGGTGCTGGGAAAAACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGGTGGC‑TTCTTCCGCCCGGGCAAAG‑GAATCGCCACAGGGGAGACG‑GATTTTTGGCGGAAGGGCG‑G‑C‑AAAAGAAACAGaaaaaaaacccgc > 2:852588/1‑229 (MQ=255) cGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCa < 2:706304/103‑1 (MQ=255) cGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCa > 1:706304/1‑103 (MQ=255) gTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTgcg < 1:717386/141‑1 (MQ=255) tGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGT‑GGGGATGATCATATC‑AAAACGACCTTT‑CACCC‑CGG‑GAAAAACGTTGCTGGCAAAGACTTTACCTTC‑AACACCCTTGGGCGCAAGGGTTGGGCGGCCGGC‑TTTTACCCCCGGGGCGGAG‑ACCTCGCACAAGGGGAGGCG‑AAATTTCTGC‑GAAAGGGCGG‑C‑AAAAGAAACAGAAAACAAGCCCGCCCCCCAAcc > 2:904944/1‑239 (MQ=255) ggcccgcATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CCCCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg < 1:897806/236‑1 (MQ=255) gcgcCGGATCCAGGGTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATTATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg < 1:803377/239‑1 (MQ=255) gcgcCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGGGATGATCATATC‑AAAACGACCTTT‑CACCC‑CGG‑GAAAGACGTTTCTGGCAAAGAATTCACCTTC‑CACACCGTTGGCCGCAAGTGTTGCGCGGCGGGC‑TTCTAACCCCGGGGACGAG‑ACATCCCACAACGAGGGACG‑GATTTTTGGC‑GAAGAGCGCGAC‑AAAGACAACTAAAAACCCGccccgcccccagcg > 2:312557/1‑228 (MQ=255) gaTCCAGGGTGGTTTGCACCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCCCCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATcc < 1:92618/238‑1 (MQ=255) cATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATcc < 1:606822/239‑1 (MQ=255) aTCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCa < 1:146287/239‑1 (MQ=255) gTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTa > 1:95039/1‑237 (MQ=255) gTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGGGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACCAGGTGAGACG‑CATTTTCGGC‑GAATGGCGCC‑C‑CAAGGCAAATGAAAGCACGCCCGCGCCCCAGCCGACATcctggctctttt > 1:4251/1‑228 (MQ=255) cccATGGGGGAACGGCGGGTT‑GGAGATGATCATGTC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCCCCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATcc < 1:625293/220‑1 (MQ=255) cctgtgtgtAACGGGGGGTT‑GGGTAGGACAATATC‑AAAACGTCCTTT‑CCCCT‑CGG‑AAAAGAAGTTTCTGGCAAAGGCTTCCCCCTC‑AACCCCGTTGGCCGCAAGTGTTGGGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCAAAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGtgtg < 2:157097/234‑1 (MQ=255) cATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CCCCG‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 1:856072/239‑1 (MQ=255) cATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑GAAAGACGTTGCTGGCCAAGACTTCACCTTC‑AACACCCTTGGCCGCAAGGGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCCGAG‑ACATCGCACAAGGTGGGACG‑AAGTTTCGTC‑GAATGGGGCG‑C‑CAAGGCAACTGCAAAACCCCCCCCCCCACCCGCCACATCCACCACCTTACCATTctcgtgg > 2:642747/1‑233 (MQ=255) catgggggaCGGGGGGTTGGGGGATGAACATATC‑AAAACTCCCTTC‑CGCCT‑CGG‑AAAAGTCGTGGCGGGAAAGGACTGCCCCTCC‑ACCACCGTTGGCCGAAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTGCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 2:796078/231‑1 (MQ=255) gTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CCCCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAg < 1:21866/239‑1 (MQ=255) gAACGGGGGGTT‑GGAAATGAACAAATC‑AAAACGCCCTTT‑CCACT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTGGGCCGCAAGTGTGGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGtt < 1:839849/238‑1 (MQ=255) | ATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTT‑GGAGATGATCATATC‑AAAACGACCTTT‑CACCT‑CGG‑AAAAGACGTTGCTGGCAAAGACTTCACCTTC‑AACACCGTTGGCCGCAAGTGTTGCGCGGCTGGC‑TTCTACCGCCGGGGCAGAG‑ACATCGCACAAGGTGAGACG‑AATTTTCGGC‑GAATGGCGCG‑C‑AAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTT > NC_000913/4606665‑4607125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |