| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,175,770 | T→C | 12.7% | L115P (CTC→CCC) | lolC → | lipoprotein‑releasing system transmembrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,175,770 | 0 | T | C | 12.7% | 146.3 / 3.0 | 65 | L115P (CTC→CCC) | lolC | lipoprotein‑releasing system transmembrane protein |
| Reads supporting (aligned to +/- strand): ref base T (23/30); new base C (6/3); total (32/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCGGGGTGATGGCGCTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGTATTCCAAGCCAGCGCCTGTTCAATGTGATTGGCACTTTCGCC > NC_000913/1175532‑1175999 | cgcGGGGTTGTGGCGCTTGGCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGATCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCGTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCt < 1:438873/237‑1 (MQ=255) cGGGGTGATGGCGCTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGTTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCTCg > 1:982328/1‑239 (MQ=255) ggggTGATGGCGCTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCCCgg > 1:675823/1‑239 (MQ=255) ggggTGATGGCGCTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGCTGCTCgg > 1:85296/1‑239 (MQ=255) ggggTGATGGCGCTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCCCgg > 1:870820/1‑239 (MQ=255) cTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGACGTTAATCGCGTCGCACCTATTACTACCGGTGATTTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCGCGGTATCGCACCGgc > 1:1062246/1‑239 (MQ=255) ggTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCTCGGTATCGACCCGgcgc > 1:807962/1‑239 (MQ=255) acaGTATTGTCAGTGAGGAACGGCTTTGAG‑CGCTAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCaaa < 1:855997/238‑1 (MQ=255) aGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGGGATGTGGGACTGCAAAACGGGCGCAGC‑GTGCGGGTCGGGGGGGTGCGCGGGTTCGGCCCCGCCCAAAAAg > 2:830006/1‑239 (MQ=255) ttATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCGGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGa < 1:302/238‑1 (MQ=255) aTTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGa < 1:291006/237‑1 (MQ=255) tGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAACCGCGCGCAGC‑GTGGCGGCCGGGGTGATGTTCCGTATCCGCCCGGCGCAAAAAGATccc > 1:55872/1‑238 (MQ=255) tGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGCCGCACCTATTACTCCCGGTGAGTTGGCACTGCAAAACGCGCCCACCGGGGGCGTTCGGGGGTCTGCCCGGGTGAGACCCGGCGCCAAAAGaac > 2:765987/1‑236 (MQ=255) tGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGGCAAACTGGACGGCGTTAGTCGCGTCGCACCTATTACAACCGGTGCTGTGGTACTCCAAAACACGCGCGGC‑GGGGCGGCCAGGGGGGTGTGCGGAGACCACCCGGCGGGAAAAGAACCa > 2:473144/1‑239 (MQ=255) tCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGGTCGGTATCGACCCGGCGCAAAAAGATCCCCt > 1:1030843/1‑239 (MQ=255) gTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGAGCGCCCAGC‑GTGGCGGTCGGGGGGATGCTCGGTATCGACCCCGCGCACAAAAAACCACTTa > 1:1006232/1‑238 (MQ=255) gTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGAGTCGCACCTATTACTACCGGTGATTTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGGCGGGGGGAGGCTCGGCGTTGACCCGGCTCAAAAAAATCCACTTac > 1:551651/1‑239 (MQ=255) gttgaACGGCTTTGGGCCGCG‑GCTGCAAAAAAACATCCTTGGCCGGATGCCCAAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCCCGGTATCGACCCGGCGCAAAAAGATCCACTTacac < 2:673070/237‑1 (MQ=255) gatgaACGGCTTTGTG‑CGTGCGTTTGAAAACTAATCCCTTGGCCTGAGGCCACAGGCAAGTCTCTCTTGTGAGCCTGGCTCTCTTAACCCGCAGCAACTCCCAGAGACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCGCCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTacac < 2:274027/239‑1 (MQ=255) gatgaACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCCCGGGATCGACCCGGCCCAAAAAGAACCCCTTacc > 1:673070/1‑237 (MQ=255) atgaAGGGGTTTGAG‑CGCGGGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATGCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTacac < 1:999128/238‑1 (MQ=255) tttGAC‑CGCGGGCTGCAAATCAACATCCTTGGCCTGATGCCACCGGCAATTCTCTCTTCTGGGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATTGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGt < 2:295846/239‑1 (MQ=255) ttGAG‑CCCGGGCTGAAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGt < 1:934409/238‑1 (MQ=255) aaaaCAACATCCTTGGCCGGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTTTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGaaacaaac < 1:698353/238‑1 (MQ=255) ccTTTGCCTGACGCCACAGGCAATTTCTTCTTCTGAGCATGGCTCCTCTAACCCGCAGCAACCCCCAGAACCGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGc < 2:881863/239‑1 (MQ=255) ccTTGCCCTGAGGCCCCAGGCAATTCTCCCGTCGTAGCATGGCTGTCTTAACCCGCAGCAACCCCCAGAAACGGCAGTCAAACTGGACGGGGTTAATCGCGTCGCCCCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGc < 2:196129/239‑1 (MQ=255) ttGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCg < 1:765987/239‑1 (MQ=255) gCCTGCTGCCACCGGCAATTCTCTCTTCTGAGCAGGGCTCCCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCgggg < 2:249251/239‑1 (MQ=255) ccTGATGCCACAGGCCACTCTCTTGTCTGGGCTGGGCTACTTTACCCCGCGGCAGCTCCCAGAGACGGGAGGCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACGGCCGGTGATGTGGTACTGCAGAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCgggg < 2:82837/238‑1 (MQ=255) aTGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCCAAAAGATCCCCCTACACCGTATCTGGTCAATGTGAAACAAAATGACCCCGAGCCGGGGaaaac > 1:208295/1‑237 (MQ=255) aTGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCTCGGGATCGGCCCGGCGCCAAAAGATCCACTTACACCCGATCTGGGCAATGTGAAACAAACTGACCTCGAGCCGGGGAAata > 1:499348/1‑239 (MQ=255) ggCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCt < 1:766603/150‑1 (MQ=255) aTTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACCCCCAGAAACGGCAGGCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCTACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCt < 1:991729/239‑1 (MQ=255) aGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGCCGGGGTGATGGCCGGGATCTACCCGGCCCAAAAAAGACCCCTTAAACCGAAACTGGGCAACTGGGAACAAACCGAACACAAACCGGGGAAAAAAAAAGTCACACTCgcggaaaaaaag > 2:493496/1‑228 (MQ=255) ctgaaCCCGCAGGAACTCCCAAGAACTGCAGTCAAACCGGACGGCGTTAAGCGCGTCGCTCCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCt < 1:143244/236‑1 (MQ=255) cagcaACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCCCA‑GCTAGGCGTTaa > 1:681073/1‑239 (MQ=255) cagcaACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAAGTTGAAACAAACTGACCTCGAGCCGGGGAAATATAAAGTCATCCTCGCGGAACAACTTGCCTCACA‑GCCAGGCGGTaa > 1:412357/1‑239 (MQ=255) acccccGGAAACGGCAGTTAAACTGGACGGGCTTAAGCCGGGCGCACGTATTACTACCGGTGTTGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACCGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATcgcg < 2:397431/236‑1 (MQ=255) acccccAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATcgcg < 1:754616/236‑1 (MQ=255) aCTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATcgcg < 1:493496/239‑1 (MQ=255) cAGTCAAACTGGAAGGCGTTTATCGCGTCGGACCTACTACTACCGGTGATGTGGCACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACGCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCGCGAGCCGGGGAAATATAATGTCATCCTCGGTGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCcg < 1:868100/238‑1 (MQ=255) atccatcgggAGGGGGTTAATCGCGTCGCCCCTTTTACGACCGGGGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGt < 2:1062246/231‑1 (MQ=255) aaaaCTGGACGGCGTTAATCGCGTGGCCCCTATTACTACCGGTGAGGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑a < 2:85296/238‑1 (MQ=255) gcGGGGTTAATCGCGTCGCACCTATTTCTACCGGTGATGTGGTACGGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTAcc < 1:196772/237‑1 (MQ=255) gTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACt < 2:956748/98‑1 (MQ=255) gTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCCCGGTATCGACCCGGCGCAAAAAGATCCACt > 1:956748/1‑98 (MQ=255) ctgtccTTTTCCTACCTGTGATGGGCTCCTCCAAAGCGCGCGCGGT‑GTGGCGGTGGGGGTGATGCCGGGTATCGACCCGGCGCAAAAAGGTCCCCTTACACCGTATCGGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCa < 2:499348/235‑1 (MQ=255) gCACCTATTACTGCCGGTGATGGGGTCCTGCAAAGGGGTCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCa < 1:962448/238‑1 (MQ=255) cccTATTACGACCGGTGATGTGGTACGGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCcgcg < 1:42803/208‑1 (MQ=255) aTTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GGTGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTAcc < 1:621344/215‑1 (MQ=255) cGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGTa > 1:771278/1‑239 (MQ=255) cGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCCCGTG‑ATGGTACCATCTGCCAGCCCGTTCACGCCGATGGGGCGTa > 1:681485/1‑239 (MQ=255) gTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGaaca > 2:143245/1‑151 (MQ=255) gTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGaaca < 1:143245/151‑1 (MQ=255) tGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCGTCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGGTAATCGCGGTGATCAAATACGCGGG‑CTGGTACCTTTTGCCAGCCAGTTCACGCCCATTGGGCGGATTc > 1:251619/1‑239 (MQ=255) gATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCt < 2:454393/47‑1 (MQ=255) gATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCt > 1:454393/1‑47 (MQ=255) gtggggTACCGCAAAGCGCGCGCCGC‑GTGGCGGTCGGGTTGATGCCCGGTAACGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGTATTcc < 1:473144/234‑1 (MQ=255) aCTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGGGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGGTGATTCCAAGCCAg > 1:565393/1‑238 (MQ=255) cAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCCCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGGTGGGGCGGATTCCAAGCCAgcg > 1:767121/1‑236 (MQ=255) cAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCCCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGAAGGTGCGGATTCCAAGCCCGCCCCt > 1:1070589/1‑239 (MQ=255) cAAAGCGCGCGCAGC‑GTGGCGGTCGGGGAGATGCTTGGCATCGGCCCCGCGCCAAAAGGACCACTTACCCCGGATCTGGTCAATGGGAAACAAACTGACTCCGAGACGGGGGAAAATAATTGCATCCTCGGGAAAAAACTTGAC‑CACACGCTAGGCGTTCAACGCGGGGGACAAAACCACGTG‑AGGGGAACACCTGCCAGCCGGATTACCCCGATGGGGGGGATTCCaaacgaaggccc > 2:884758/1‑229 (MQ=255) aaGCGCGCGCAGC‑GTGGCGGTCGGGGGGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGGATTCCAAGCCAACGCCTGt > 1:818493/1‑239 (MQ=255) cgggcgcAGG‑GTGGGGGTCGGGGGGATTCTCGGTAGCGCCCCGGCGCAAAAATATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGTATTCCAAGCCAGCGCCTGTTCa < 2:681073/236‑1 (MQ=255) cgcgcgcAGC‑GTGGCGGTCAGGGTGATGCTCGGTATCGACCCGGCGCCAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGGGCCGGGGAAATATTATGTCATCCTCGGCGAAAAAATTTCCCCACA‑GCTAGGCGTTAATCGCGGGGATCAAATCCCCCTG‑ATGGGACCAACCGCCACCCATTTCACGCCGGTGGGGGGTATTCCAAGCCAACGCCGGGTCa > 2:17265/1‑239 (MQ=255) cgcgcAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCCCTTACACCGTATCTGGTCAAAGTGAAACAAACTGACTTCGAGCCGGGGAAATTTAATGTAATCCTGGCCGAACAACTTGCCTCCAA‑GCTGAGCGTTAATCTGGGAGATCAAAACAG‑GTGCTTGGTACCACGACCCACCCAGTTTAACCCGATGGGGGGGTTTCCAATCCA‑CGCCCGtttcaaa > 2:804818/1‑234 (MQ=255) cgcgcAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCCAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCTCGGTGACCAAATCCCCCGC‑TTGGTACCCACTCCCCGCCAGTTCACGCCCATAGGGCGGATTCCAAACCAGCGCCCCTTCaaa > 2:203381/1‑238 (MQ=255) ccctcggtctGGCGGTCGGGGTTATTCTCGGGATCGCCCCGGCGAAAAAAGCTCCACTTCCCCGGTATCTGGTCAATGTGAAACAAACTGTCCGTGGGCCGGGGAAATATAATGTCAGCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCCGCCAGTTCACGCCGATGGGGCGTATTCCAAGCCAGCGCCTGTTCAAt < 2:726759/230‑1 (MQ=255) ggTGATGCTAGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTACTTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGTATTCCAAGCCAGCGCCTGTTCAATGTGATTGGCACTTTcgcc < 1:804818/238‑1 (MQ=255) | CTCGGGGTGATGGCGCTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAG‑CGCGAGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTCTTAACCCGCAGCAACTCCCAGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCGCAGC‑GTGGCGGTCGGGGTGATGCTCGGTATCGACCCGGCGCAAAAAGATCCACTTACACCGTATCTGGTCAATGTGAAACAAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACA‑GCTAGGCGTTAATCGCGGTGATCAAATCCGCGTG‑ATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGTATTCCAAGCCAGCGCCTGTTCAATGTGATTGGCACTTTCGCC > NC_000913/1175532‑1175999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |