| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,242,879 | T→G | 16.1% | T68P (ACC→CCC) | ldcA ← | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,242,879 | 0 | T | G | 16.1% | 163.4 / 2.6 | 74 | T68P (ACC→CCC) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| Reads supporting (aligned to +/- strand): ref base T (23/35); new base G (13/2); total (37/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.32e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACGAAAT > NC_000913/1242645‑1243111 | aaTGGTGCTGGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGgtgt < 1:230761/237‑1 (MQ=255) ggcgCTCGGTAAAGGCGTTCAGTTCATCCGCGCAAAAGTTTGCTACAAGCATGGGGCCGCTAAAGGTAATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAACCGCTATGTCCGCAAATGAGTAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTgggg < 1:505919/236‑1 (MQ=255) cGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCAACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGGACCGGAAACGCCGCG‑GAACGCCCT‑GACGATGGGGTTggggggcagc > 1:654951/1‑234 (MQ=255) cGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACAGGTCATGTTGTTGGCTAGCCACCAGTGCCTTGCAGTCAATATCTGCCCGTAAACGACTGGCACCGTAACACCCCCG‑TAAAGCAAG‑CACAATGGGGTGGGGGGGagtc > 1:488447/1‑239 (MQ=255) aggaaaaGGCGTTCAGTTCCTCCGCGCCAAAGTTGGCTCCCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGCCCGCACGGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTagtc < 1:64822/235‑1 (MQ=255) cgcCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCCAATGAGCAAAGGGCCATGTTGTTGGCGAGCCCCCCGTGCCTGCCAGTCAATATCTGCCATGTAACGCCCCGCACCGTAACCCCCCCG‑TACAGCGCT‑CACCGTGGGGTTGGGGGAAGTACG‑CCTGGGAAGGGAAttaaaaca > 2:358033/1‑232 (MQ=255) cgcCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGTGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCCCCCTAACCGCCGCG‑TACAGCCAG‑CACGATGGGGTTGGGGGTAGGCAG‑CCTGGCAAGGGACTTGAGACCt > 1:117145/1‑239 (MQ=255) cgcCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CCCGATGGGGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTTAGATCt > 1:1100526/1‑239 (MQ=255) cgcCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGGGTTGGGGGGAGGCAG‑TCTGGCAAGGGAATTGAGATCt > 1:875736/1‑239 (MQ=255) tgggCTACCAGCTGGGGGCGGCTAGAGGGTATGCGATTGCCGTGTGCAAGAAGACCGCATTGAATGGCGTTAAAGCCGGTTGGACCGGAAAGGAGCAACGGGTCTGGTTTTTGGGGGGCCCCCAGTGCCTGCCAGTAAATATCGGCCAGTAAACGGGTGGCACCTTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑a < 2:41820/234‑1 (MQ=255) ttGCTACCAGGATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTAGGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACg < 1:690327/238‑1 (MQ=255) gCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGGGTTGGGGGGAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCCG‑ACGCCCTGTTTcc > 1:9960/1‑239 (MQ=255) cTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCCCTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCaaa < 1:768117/239‑1 (MQ=255) cTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGGGCCTGCCCGTCAATATCGGCCAGTAAACGCCTGGCACCGTAACCGCCGCG‑TACAGCCCG‑CACGATGGGGTTGGGGGGAGCCAG‑TCTGCCCAGGGACTTTAGCACTTCCAC‑ACCCCCTTTTTCCGAACCCCCaaa > 2:892713/1‑239 (MQ=255) cTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAAACGCTCTGTCCGCAAATGAGCAACCGGTCATGTCGTTGTCGCGCCACCACTGCCCCCCAGTAAAATTCTGCCAGTAAACGAACGGGACCGTAACCGCCGGC‑TACACGCCG‑CCCGCTCGGCTCGGGGGTGGTCAGCGCTGGCCGGGGACATG‑GATCTTCCAA‑ACCCCCTGTGTCCGCAcaccccaa > 2:993868/1‑232 (MQ=255) atgaCATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGCTGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATATTCCAG‑ACGCCCTGTTTCCGTACCCGCAAAACGCTcaca > 1:202443/1‑239 (MQ=255) atgaCATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGGGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCCCTGTTTCCGTACCCGCAAAACGCTcaca > 1:815849/1‑239 (MQ=255) atgaCATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGGGTTGGGGGGAGTCAG‑TCTGGCAAGGGAATTGAGACCTTCCAG‑ACGCTCTGGTTCCGTACCCGCAAAACGCTcaca > 1:598439/1‑239 (MQ=255) tgaCATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGGAGCCAG‑TCTGGCAAGGGAATTGAGACCTTCCAA‑ACCCCCTGTTTCCGTACCCCCAAACCGCTCCCaa > 1:139050/1‑239 (MQ=255) aaTTGCCAGGCGCCGAAAGCCCGCACTGAAGGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCGGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAacga < 1:144861/238‑1 (MQ=255) tttcccttGCGCCAGAAGCCCGCATTGAAGGGCGGTAAAATCGCTATGTCCGAAAATGAGCAACGGGTCATGTTGTGGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAACCGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAacgac < 2:875736/232‑1 (MQ=255) tGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGGATTGAGATCTTCCAG‑ACGCCCTGTTTCCGTACCCGCAAAACGTTCACCAAGCCGGGGAAt > 1:392612/1‑239 (MQ=255) cgcCAGAAGACCGCACTGAATGGCGGTAAAATCGCCTTGTCCGCAAATGAGCAACGGGTCCTGTTGTTGGAGAGCCACCAATGCCTGCCAGTCAAAATCTGCCAGGAAACGACAGGCCACGTAACCGCCCCGATAC‑GCCAGACAGACGGGCGTGGGGGGAGGAAAG‑CCTGAC‑AGGGAAAGGAGATTGTCCAG‑AAGGCCTGTTTCCGGACCCCCAAAACGCTCAAAAAAACGGGaaaaaa > 2:399875/1‑239 (MQ=255) gcCAGAAGACCGCACTGAATGGCGGAAAAACCGCTATGGCCGCAAATGCGCACCGGGTCATGTTGTGGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACg < 1:500663/218‑1 (MQ=255) gaagaCCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCCGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCCCCAAACGCTCACAACGCCGGGCAAAAAcccc > 1:704633/1‑236 (MQ=255) aacgccccACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGGGCAACGGGTCATGTTGTTGGCGGGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGa < 1:64510/232‑1 (MQ=255) aggccggtcgaaaTGGGGGTAAAATCGCGTGGTCCGAAAATGGGCAGGGGGTCATTTTGTGGGCGAGCCCCCGGTGCCTGCCAGGAAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGa < 2:564687/227‑1 (MQ=255) cGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGGGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGTACCTCCAGCACCCT‑TGTTTCCAGCCCCCCAAAACGACCACAACGATGGGCAAAAAcaccaacggta > 2:219100/1‑229 (MQ=255) cACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCCGCCAGTCAATATCTGCCAGTAAACGACTCGCACCCTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGGAGTCAG‑TCTGGCCAGGGAATTGAGATCTTCCCG‑ACGCTCTGTTTCCGTACCCGCAAAACACCCCCAACCACGGGCAAAAACACCGACGCTAtt > 2:123406/1‑239 (MQ=255) cACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGGTGTTGGCGAGCCACCAGTGCCTGCCAGTCAAAACCTGCCAGTAAAAGACTGGCACCCTAACCGCCCCG‑GACACCCAG‑CACGATGGGGGTGGGGGTAGTCAG‑TCTGGCCAGGGGATTGAGATCTTCCAG‑CCGCCCTGGTTCCGTACCCCCCAAAAGTCCACAAACACCGGCAAAAAACCCCCCGTTAt > 2:64510/1‑238 (MQ=255) ccTGAATGGCGGTAAAATCGCTAGGTCCGAAAAGGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACGGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTg < 1:612151/238‑1 (MQ=255) ggTAAAATCGCTATGGCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGGCAATATCTGCCAGGAAACGACTGGGACCGTAACCGCCCCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAAGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCCCAAAACGCTCCCAACGACGGGCAATAACCTCCACGTTATTGGCTTgtagc > 1:323639/1‑234 (MQ=255) aaatgcGCTATGTCCGCAAATGGGCAACGGGTCATGTTGTTGGCGAGCCCCCCGTGCCTGCCAGTCGTTTACTGGCAGATATTGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCcg < 1:782277/234‑1 (MQ=255) aaaTCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCC‑TACAACCAG‑CACGATGGTGTTGGGGGGAGTCCG‑TCTGGCCAGGGAATTGAGATCTTTCCG‑ACGCCCTGTTTCCGGACCCGCAAAAAGCTCCCCACAACGGGGAAAAAACTACCCGTTTTTTTCTTGATAcccccg > 2:469458/1‑237 (MQ=255) tATGCCCGAAAATGGACAACGGTTAATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGGCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTa < 1:892713/239‑1 (MQ=255) tGTCCGAAAAGGGGCAATGGGTAATGTTGTTGGCGAGCCCCCAGTGCCTGCACGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAg < 1:232129/239‑1 (MQ=255) agccccaaaaTGAGCAACGGGTAATGTTGTTGGCGAGCCACCAGGGCCTGCCAGTCAATTTCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAg < 1:577491/232‑1 (MQ=255) cGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCACAACGCTCCCAACGACGGGCAATAACCTCGACGTTATTGCCTTGATTCCCCGCGCCGGTAAGgcgc > 1:205353/1‑239 (MQ=255) gaaaaTGAGCAACGGGCTATGTTGTGGGCGAGCCCCCGGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCt < 1:833778/237‑1 (MQ=255) gCAAATGGGCAAGGGGTCATGTTTTTGGCAAGCCACCATGGCCTGCCAGTAAATTTCTGCCAGTAAACGACTGCAACCGTACCCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCt < 1:1069477/239‑1 (MQ=255) aGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCACGGGAATTGAGATCTTCCAG‑CCGCTCTGTTTCCGTACCCGCCAAACGCTCACAACGACGGGCAATAACCTAGACGTTTTTGACTTGATGCCCCGCTGCGGTAAGGGGCTGGaaccc > 2:556420/1‑235 (MQ=255) ggTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCAAG‑ACGCTCTGTTTCCGAACCCGCAAAACGCTCACAACAACGGGCAATAACCTCTACGTTATTGACTTGAGGCCCCCCTCCGGGAAGGCGCGCGATACCACACAgc > 2:166526/1‑239 (MQ=255) cgtttttttgGCGGCCCCCCGGTGCCTGCCAGTCAACATCGGCCATGAAACGCGTGGCACCGTACCCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGcgcg < 2:815849/232‑1 (MQ=255) cATTTTGTTGGCGGACCCCCAGGGCCGGCCAGTCAAATTCTGCCAGGAAACGACGGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGcgcg < 1:990547/239‑1 (MQ=255) cATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGcgcg > 1:837367/1‑239 (MQ=255) gtttttGGCAGGCCACCAGGGCCTGGCAGTCAATGTCGGCCAGTAAACGACTGGCCCCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCgcggcg < 1:147594/239‑1 (MQ=255) tgtggGGGAGCCCCCAGGGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTg < 1:725319/239‑1 (MQ=255) tgtggGCGAGCCACCGGTGCCTGCAAGACAATATCCGGCGGTAAACGTCTGTCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTg < 1:358033/239‑1 (MQ=255) ttgGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCCAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGt > 1:558417/1‑236 (MQ=255) aGCCCCCAGTGCCTGCCAGTCAATATCGGCCAGTAGACGACTGGCTCCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTa < 1:185196/238‑1 (MQ=255) aGCCCCCAGTGCCTGCCAGTAAATTCCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTa < 1:369978/238‑1 (MQ=255) cagtggcctgccAGTAAATTTCTGCCAGTAAACGACTGGAACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAg < 1:741328/234‑1 (MQ=255) tgcaAGTCAATATCGGCCAGTAAACGGCTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTa < 1:192038/225‑1 (MQ=255) tCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTACGGCGCTGGAAACCACGCAGCGCGGCGTGCTGTTTAATGCAGAAACCCGATGGGGc > 1:472372/1‑239 (MQ=255) tCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGGGCTGTTTAATGCAGTAACCCGCTGGGGc > 1:442199/1‑239 (MQ=255) tatCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGTAGGGAAATAACCTCGACGTTATTGCCTTGATGCCCCGCGACGGGAAGGCGCTGGAAACCACGCAGCGCGGCGGGCTGGTTAATGCAGAAACCCgtgcctataaaa > 2:192038/1‑228 (MQ=255) tGCCAGTAAACGCCTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTTTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGt < 1:15223/239‑1 (MQ=255) gCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGTTACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTg > 1:935052/1‑239 (MQ=255) ccAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGa > 1:159335/1‑239 (MQ=255) ccAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGGACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAAc > 1:110044/1‑219 (MQ=255) cTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGAAACCACGCAGCGCGGCGGGCTGTTTAATg > 1:645733/1‑201 (MQ=255) ggtgccggccgcG‑TGCAGCCAG‑CACGATGGGTTGGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTGTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAAt < 2:159335/231‑1 (MQ=255) cGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGCTGGGGCAATTAAGTGAAACAG‑AGACATGGCAAt > 1:632143/1‑238 (MQ=255) tAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGTCGCTGGATACCCCGCACCGCGGGGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGGGAAACAA‑GAAAATGGCAAtt > 2:593198/1‑237 (MQ=255) cagccag‑gAGCATGGTGTTGGGGGTAGTCAG‑GCTGGGAAGGGAATTGAATACTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCGCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAg < 1:570281/239‑1 (MQ=255) ccag‑cACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTCCCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTg > 2:414786/1‑166 (MQ=255) ccag‑cACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTg < 1:414786/166‑1 (MQ=255) cACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGCCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCGCATGGGGCAATTAAG‑GGAACAGCAGACCTGGCAATTCCTTGCTGacaaacaaaaggaa > 2:137353/1‑229 (MQ=255) ccggttgtgtTGGGGGGTGTCAG‑TTCGGCAAGGGAATTGAGATTTTCCAG‑AAGCTCTGTTTCCGTACCCGCAAAACGCGCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACGaa < 2:1100526/232‑1 (MQ=255) ccGATGGTGTTGGGGGTAGTCAG‑TCTGGAAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACg < 1:399875/235‑1 (MQ=255) aCGGTGGTTTGGGGGGTACTCAG‑TCTGGCAAGGGAATTGATATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGGCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACg < 1:993868/236‑1 (MQ=255) aCGATGGTTTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACg < 1:560713/236‑1 (MQ=255) aCGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACg < 1:469458/236‑1 (MQ=255) aCGATGGTGGTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACGaa < 1:556420/238‑1 (MQ=255) aCGATGGGGTTGGGGGTAGTCAG‑TCTGGAAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCGCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGACCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACg < 1:976846/236‑1 (MQ=255) cGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATGGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACGAAAt < 1:542112/239‑1 (MQ=255) | AATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCG‑TACAGCCAG‑CACGATGGTGTTGGGGGTAGTCAG‑TCTGGCAAGGGAATTGAGATCTTCCAG‑ACGCTCTGTTTCCGTACCCGCAAAACGCTCACAACGACGGGCAATAACCTCGACGTTATTGACTTGATGCCCCGCGTCGGTAAGGCGCTGGATACCACGCAGCGCGGCGTGCTGTTTAATGCAGTAACCCGATGGGGCAATTAAGTGAAACAG‑AGACATGGCAATTCCTTGCTGACAACAGAAACGAAAT > NC_000913/1242645‑1243111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |