Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,173,361 | 0 | C | . | 90.2% | 260.3 / 12.1 | 71 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
Reads supporting (aligned to +/- strand): ref base C (3/4); new base . (57/7); total (60/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.13e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
* | NC_000913 | 2,173,362 | 0 | C | . | 90.4% | 261.0 / 8.9 | 71 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
Reads supporting (aligned to +/- strand): ref base C (3/2); new base . (57/7); total (60/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.24e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. |
ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCAC > NC_000913/2173125‑2173591 || atgaGCCGCCAGTGGGTTGTGCAACCCAATAGTTTGCGTCGCGATCCACAGGGTGATGCCCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATaccacc < 1:518823/235‑1 (MQ=255) cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACCAACAGCAATTAAAAT‑GGTGAGTGGGAGAAAAATCA‑GGCTTGCCGATaccaccgccggatgc > 2:882743/1‑229 (MQ=255) cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACAAcccccgtatgg > 1:307255/1‑231 (MQ=255) cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGAAGCACC‑TGATTACCCGGCACCCAAACAGCAATTAAAAT‑GGAGAGTGGGATAAAAATCA‑GGCTTGCCGATACCAaccccgtatgg > 1:712399/1‑231 (MQ=255) ttGGGTTTGCAAACCAATAGTTTGCGTCCCGATCCACAGGGTGATGCTTATAATGATGACCCCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCAACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTccc < 1:875553/238‑1 (MQ=255) gtgCAACCAAATGGTTGGGGTCGCGATCCAAGGGGGGATCCCCAAAATGATGCCACCCGAGATGAAGGTGCGGAAAAGA‑TTTCCCCGAGACAGGGGGCCCGCCA‑TCGCCAAGAAGAAGCCGATGGGGGAAAGACCGCCAAACGGCAGCACC‑TGATTCCCCGGCACACAACCAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc < 2:800788/238‑1 (MQ=255) cAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGGTTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGAATGTCCCAGCAGCAAc > 1:1052450/1‑238 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACCTACAGCCATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGAATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:1318276/1‑239 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGCGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGCATTTCCCAGCAGCAACGCCGGATCAAGGcc > 1:701860/1‑239 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGTTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGACCAAGGcc > 1:315719/1‑239 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:632330/1‑239 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGACCAAGGcc > 1:870953/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCCCC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGCAACCA‑‑CCGCCGCATGTCCCAGCAGAAACGCCGGACCAAGGCCaa > 1:206637/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACCCAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGA‑ACC‑CCCCCCCGTATTTCCCAGCCGCAACCCCGggccaaggccaa > 2:1213065/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACCGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GCCTTGCCGTTACCACCC‑‑CCGTATGTCCCAGCAGCAACCCCGGATCAAGCCCa > 1:1289944/1‑238 (MQ=255) gATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGGGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGGCCCAGCACCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg > 1:821617/1‑238 (MQ=255) aTGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgcc > 1:89114/1‑239 (MQ=255) aTAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGCTTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCACCC‑‑CCGTAGGTCCCAGCAGCAACGCCGGACCAAGGCCAAACAGGAACCCCCAACCCCCGAACt > 2:5655/1‑238 (MQ=255) aTAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGCCCGCCGAACt > 1:1108914/1‑238 (MQ=255) aTAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACt > 1:1199541/1‑238 (MQ=255) aaTGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCGCACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTc > 1:964426/1‑238 (MQ=255) aaTGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCCGGAACCCCTGACCGCCGAACTTc > 1:276178/1‑238 (MQ=255) aaTGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CAGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGACACTCCTGACCGCCGAACTTc > 1:1359743/1‑238 (MQ=255) tggtgaccccccGAG‑TTAAGGGGGGGGAAAGATTTTCCAGGATGC‑CGGGGACCCCCACTCCCCAGAAAAACGCCGAGGGGGGCAAGATCGCCAAGGGGCAGCACG‑TGATTACCCGCCACAAAAACAGCAATAAAAAT‑GGTGAGGGGAAAAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGc < 2:89114/230‑1 (MQ=255) acacCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa > 1:705511/1‑239 (MQ=255) agaTTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACt > 1:969253/1‑238 (MQ=255) aaGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAg > 1:274046/1‑238 (MQ=255) aaGGGGCGAAACAGT‑TTACCCCGAGCCACGGCAACCGCCA‑TCGCCACGAAAAAGCCGATGGTGGCAAGATCGCCAAACGACAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGAAAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:894285/239‑1 (MQ=255) cGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAACCCGGAACTCCTGACCGCCGCACTTCGCCTGTAAACGCCAACACGACTGCtt > 1:605019/1‑239 (MQ=255) ggAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATACAAATCA‑GGCTTGCCGAAACCA‑‑CCGCCGTATGTCCCCGCAGCAACGCCGGAACAAGGCCAATCAGGAACTCCTGCCCGCCGCACTTCGCCCGGAAACAACCACCACCCTGCTTa > 2:918042/1‑239 (MQ=255) ggAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCC‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCCGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCCCCCCACTTCGCCTGGAAAACAACACGACCCCGCTTa > 2:342215/1‑239 (MQ=255) cAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGa > 1:1265234/1‑239 (MQ=255) ttCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGCTgggg > 1:944243/1‑238 (MQ=255) cACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGCGGGATAAAAATCA‑GGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTCCGAGCCGGCTATGCGATGGGCGtt > 1:1365407/1‑239 (MQ=255) tGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAACCGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc > 1:490802/1‑239 (MQ=255) tGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACAAGCCTGCTTAGCGATAGGCGTTAAccc > 1:482605/1‑239 (MQ=255) cACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAGCAAGGCCAATCAGGAACTCCTGACCACCGAACTTCGCCTGTAAACGACTAAGAGCCTGCTTAGCg > 1:972879/1‑223 (MQ=255) cACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTAAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccat > 1:25901/1‑239 (MQ=255) cccGCCA‑ACGCAACAAAAAAGCCGATGGTGGCAAGATCCCCAAACGGCAGCACC‑TGATTCCCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGAAAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat < 1:222073/238‑1 (MQ=255) caccgcatgccccACGAAGAAGCCGATGGTGGCAAGAGCGCCAACCGGCAGCACC‑TGATTCCCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGAAAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg < 1:882743/227‑1 (MQ=255) ccGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGCCTACGAGCCTCCTTAGCGCTGGGCGTTAAACCATCCctgatg > 1:843598/1‑239 (MQ=255) ccGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGACCTTCCCCTGTAAACGACAACGAACCGACTTAACGCGAGGCGGTAAAcaatccataaag > 2:291634/1‑235 (MQ=255) ccGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTCCTTAGCGATGGGCGTTAAACCATCCatgatg > 1:226090/1‑239 (MQ=255) accA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAG‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAAGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGACCTTCGCCTGTAAACGACTACAAGCCTGCTTAGGGATGGGCGTTAAACAATCCATAATggg > 2:703345/2‑239 (MQ=255) ccccACGAAGAAGCAGGGGGGGACAATCGCCCCAAGCGGAAGCCCC‑AAATGCCCGGGCACAAAAACAGCAGTAAAAGG‑GGTTAGTGGTAAAAAAAGCA‑GGTTGGGCGA‑ACC‑CTCCGCCGTCTGCACCAGCAGCAACGCCGGATCAGGGCCAACCCGGAACTCCTGACCGCCCAACTGCGCCTGTAAGCGGCTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTaa < 2:937776/237‑1 (MQ=255) cGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTaa > 1:895589/1‑239 (MQ=255) gaaaaggCCGAGGGGGACAAGACCGCC‑AACGGCAACCCCTTGATACCCCGGCAAAAAAACAACAATAAAAAT‑GGGGAGGGGGAAAAAAACCG‑GGCTTGCAGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 2:1108914/233‑1 (MQ=255) gCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCAGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGAATGTCCCAGCAGCAACGCCGGATCAAGGCCAATAAGGCACTCCTGACCGCCGAACTTCGCCTGTAAACAACAACGAGACTGCTTAGCGATGGGCGTTACACCACCCAGCTTGGGTTTAATCAccccggg > 2:778206/1‑233 (MQ=255) ccGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCAt > 1:677143/1‑239 (MQ=255) aTCGCCAAACGGCGGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCGGAAAACGACTACGACCCTGCTTAGCGATGGCGGTTAAACAATCCATGCGGGTTTAAATCCCCCGGGGCATTaggccatccact > 2:96785/1‑228 (MQ=255) cAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATTACCCCGTGCATTACCACCATCACTaccgcc > 1:1320694/1‑239 (MQ=255) cAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTgccgcc > 1:1027478/1‑239 (MQ=255) aaCGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTCCGAGCCTGCTTAGCGATGGGCGTTAAACCCACCATGATGGGTTTAATCACCCGGGCCATTAACAGCACAACTGCCCCCGt > 2:1115289/1‑239 (MQ=255) ggCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACAAGCCTACTTAGCGATGGGCGTTAAACCATCCATGATGGATTTAATCACCCGTGGCATTACCAGCATCACTGCCGCCGtttt > 1:642652/1‑239 (MQ=255) cc‑TGATTACCGGGCACAAAAACAAAAATTAAAAT‑GGTGAGGGGAAAAAAAACCA‑GGTTTCCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGcc < 1:703345/239‑1 (MQ=255) tgtttcccccGCCCACAAACAGCAAAT‑AAAT‑GGGGGGGGGGAAAAAAAACACGGTTTGCC‑A‑AGCCCTCCGCTGTAGTCCCCAGCAACAACGCCGGACAAAGGCCAATCGGGACCTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCTTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg < 2:870953/233‑1 (MQ=255) ggCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGCCTACGAGCCTGCTTAGCGATGGGCGTTAAACCACCCATCATGGGTTTAATCACCCGTGGCATTAGCAGCATACCTGCCGCCGTTTTTCCCCCCAGCTGCAATa > 1:988354/1‑238 (MQ=255) ggCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa > 1:1280445/1‑238 (MQ=255) ggCACACAAACAG‑AATTAAAATGGGTGAGTGAGATAAAAATGA‑GGCTGGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGAAACGCCGAATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATac < 1:586868/239‑1 (MQ=255) cacacaAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg > 1:744844/1‑151 (MQ=255) aTTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTa > 1:972246/1‑239 (MQ=255) aTTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAAACCTTTGACATCGTa > 1:397419/1‑239 (MQ=255) aTTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACAATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTTCCGCCGTTTTTACCGCCCGCTGCAGTAAACCTTTGAc > 1:789677/1‑233 (MQ=255) aT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGAATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACAACGTAAACcgc > 1:627134/1‑239 (MQ=255) gTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAAACCTTTGAAACCGTAACCCCCGAg > 2:576024/1‑239 (MQ=255) gAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACCCCTTTGACCTCGTAACCCGCGAGGa > 1:1320530/1‑239 (MQ=255) aGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCACCTCCAATACACCTTTGACACCGAAACCCCCGAGGa > 2:898788/1‑238 (MQ=255) tGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGGCTTAAACCATCCATGATGGGATTAATCACCCTTGGCATTAGCAGCATCACTACCGCCGTTTTTACCGCCACCTGACAAAAACCTTTGACACCGAAAccccccagaaag > 2:99876/1‑229 (MQ=255) tGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGCCATCGTAACCCGCGAGGAtc > 1:1313096/1‑237 (MQ=255) tGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATg > 1:138915/1‑238 (MQ=255) aaaTCA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGGCATCGTAACCCGCGAGGAACCCGCTaacc > 1:474193/1‑237 (MQ=255) cA‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGCTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCCAGGATGCCGAAAATCAGc > 1:1019522/1‑238 (MQ=255) a‑GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGAAACCCGCAAGGATCCCGaaaacaacccc > 2:1311890/1‑232 (MQ=255) tGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTCGAATACACCTTTGACATCGTAACCCCCCAGGAGGCCGGTAATcctttcccttt > 2:1100510/1‑229 (MQ=255) gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGCTGGGTTTAATCACCCGTGGCATTAGCAGCATCCCTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCCTAACCCCCCAGAATCCCGTTAATAAGCCCCTTcac > 1:505426/1‑239 (MQ=255) || ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGA‑TTTCCACGATGCACGGCGACCGCCA‑TCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACC‑TGATTACCCGGCACACAAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCAC > NC_000913/2173125‑2173591 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |