| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,241,337 | A→C | 19.5% | G245G (GGT→GGG) | cvrA ← | putative cation/proton antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,241,337 | 0 | A | C | 19.5% | 157.3 / 5.6 | 66 | G245G (GGT→GGG) | cvrA | putative cation/proton antiporter |
| Reads supporting (aligned to +/- strand): ref base A (39/12); new base C (2/12); total (41/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.81e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCCAGCTAATATTGCTCTCATGATGCTGGATCATCGCAATTAGGGTAATCGTCAG > NC_000913/1241104‑1241570 | aGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGAGGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCCGAATACCGc > 1:295628/1‑238 (MQ=255) aaTCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTa < 1:1002879/237‑1 (MQ=255) cgggCAAAGGCCGAAAGGGGAGGGGGGAAAAATGCCAGCCATGCGGACAATCAGAGGCGCGGAATGGCTATGGGCAGCAGATCGGTTGGGTTAACCAACAGCCGCAGGACCAAGAAAGTGGCGATTTGCGCCA‑GCCAGGTGAGGCCGTCGAAATGTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCACAAAGATACACCGGCAGAATGCCGCTGCGTTc < 2:467417/236‑1 (MQ=255) ccAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTc < 1:1281299/239‑1 (MQ=255) ccAGAAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTc < 1:1129670/239‑1 (MQ=255) aGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGCGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAACAGGGCGA‑TT‑ACCCAGCAGACACCCGCCCAGATACACCGCCAGAATACCGCTACCTTcc > 1:1138384/1‑238 (MQ=255) aaaGACCGAAAGGGGACGGGCAAAGAATATCAACCATGCGGAAAAAATGAGCCCCGGAAGTGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACAGGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAgcg < 2:272297/239‑1 (MQ=255) tACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCag < 2:761772/239‑1 (MQ=255) aaaGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGACAAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCCCAGGAGtt > 2:9126/1‑239 (MQ=255) aaGGGGACGGGCAAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑a < 1:490646/239‑1 (MQ=255) gACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAACGCAGCAGTT‑AATgag > 1:219224/1‑239 (MQ=255) cagggCGAAGAATATCAGCCAGTCGGAAAAAAGGGCGGCCGGAATGGCAATAGGAAGCAGATCGGTTGGGGTAACCGACAGCCCCAGCAACAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATgag < 2:365528/236‑1 (MQ=255) aggggCGAAGAATATCACCCATGCGGACAAAATGAGCGCCGGAATGGCAAAAGGCAGCGGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATgag < 2:689714/236‑1 (MQ=255) aCGGGGGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATgag < 2:1057687/238‑1 (MQ=255) aCGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCCCCGTAGTT‑AATgaga > 1:912191/1‑239 (MQ=255) atcatcCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCCGAATACCGCTACCTTCCAGCGCAGTCGTT‑AATGAGAAAATCAGAAtct > 1:689714/1‑236 (MQ=255) tcatcCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCCCAGCTACACCGCCAGAATACCGCTACCTTCCACCGCCGAGGTT‑AATCGGAAAATCAGAATAcc > 1:413956/1‑238 (MQ=255) tcatcCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTT‑GGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAAAACCGc > 1:422549/1‑239 (MQ=255) aTGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATCCCGCTACCTTCCAGCGCAGTAGTT‑AAt > 1:575735/1‑215 (MQ=255) aTGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCCCTGCCTTCCAGCGCGGTAGTT‑AATAACAAAATCGGAATACGGCCCCtt > 1:25578/1‑239 (MQ=255) tGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCCGAATACCGCTACCTTCCAGCGCAGGAGTT‑AATGAAAAAATAAAAAAACCGCCCCTTa > 2:468449/1‑239 (MQ=255) aaTGGGCCCCGAATTGGCAATGGGCAGCGGATCGCTTGGGTAAACCAACGGCCCAAGCACCAGGAACAGGGCGATTTGCGCCA‑GCCAGGCGGGGCCGTCGAAATTGTGCAGGAGGCCGTGGCGGTGGCGAATAGGGCGA‑TT‑CCCCAGCAGAAAACCGCACAGATACACCGCCAGAATCCCGCTACCTTCCAGCGCAGTAGTA‑AATGAAAAAATCAGAATACCGCCACTTAATGCCAGCa < 2:295628/239‑1 (MQ=255) tggccgcCGGATCGGCAAGAGGAGTCAGACCCTTGGGGTAAACCACAACCCCCAGCACCGGGAAAAGGGCGTTTTGCACAA‑GACGGGCGAGCCCTCCGAAATTTTGCAGGATCCCGTAGCGGTTGCAAATGGGGCGA‑TT‑ACCAAGCAGAAAACCGCAAAGATCCCCCGCCAGAATCCCGCTACCTCCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAAt < 2:852446/235‑1 (MQ=255) cgcCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGCATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCAAGCAATGGat > 1:205940/1‑239 (MQ=255) cgcCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGAACAGATACCCCGCCAGAATACCGCTACCTTCCAGCGCCGAAGTT‑AATGAGAAAAACAGAAAACCGCAACTTAATACAAGCAATGGaa > 2:374634/1‑238 (MQ=255) cgcCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAACAGAAACCCGCACAGATACACCGCCAGAATACCGCTACCTTCCAACGCAGTAGTT‑AATGAAAAAATCAGAAAACCGCCCCTTAATGCCaaaaagtgaa > 2:1050299/1‑230 (MQ=255) ctgaaaTGGCAATAGGCAGCAGATCGCTTGGGTTACCCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGAAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATCCCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAACACCGCCACTTAATGCCAGCAATGGata < 1:1050299/234‑1 (MQ=255) aTAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCAACTTAATGCCAGCAATGGATATAATcctgtt > 1:543381/1‑233 (MQ=255) ggCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCACCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGGATTAATCCGGCGGGCAg > 1:1081576/1‑239 (MQ=255) gcagATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATAAAATCCGGCGGGCAGGGCg > 2:291434/1‑239 (MQ=255) gcagATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGGCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGAGATAATCCGCCGGGCAggggg > 1:1155057/1‑237 (MQ=255) gctggtgtGGTTTACCCAACCCCCCCAGCCCCAGACAGAGGGCGATTTGCGCCA‑GCCGGGGGGGGCCGGCAAAATTTTGCAGGATGCCGGGGCGGTTGCGAATCGGGCAA‑TA‑CCCCAGCAGAAAACCGCATAGATACCCCGCCAGAATCCCGCTACCTACCAGCGCAGTAGTT‑AATGAGAAAACCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATg < 2:631774/232‑1 (MQ=255) cGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGAAACACCGCCAGAAAACCGCTACCTTCCAACGCAGCAGTT‑AATGAGGAAATAAGAAAACCGCACCTTAATGCCAGCAAAGGCaataat > 2:1022290/1‑218 (MQ=255) cccAACCCCCCCAGCCACAGGAACGTGGCTTTTGGCCCCA‑GCGGGGGGGGGCGGTAGAAATTTTGCAGGTTGCTGTAGTGGTTGCGAAGGGGGCGA‑TT‑CCCCAGCAAAAACCCGAACAAATACACCGCCAGAATCCCGCTACCTCCCAGCGCAGTAGTA‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTg < 2:1155057/238‑1 (MQ=255) caccccagccccagcccCGGGAACAGGGTGTTTTG‑GCCAGGGGGGGCGGGGGCGTCGAAATTGGGAGGGAGGCCGGAGGGGTTGCGAAT‑GGGCGAGTT‑CCCCAACAGAAACCCCCAAAGAAACACCGCCAGAATCCCGCTCCCTTCCAGCGCAGGAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTg < 2:1276599/234‑1 (MQ=255) aaacgCCCCAGCACCAGGAACGTGGCGATTTGCCCCA‑GCCAGGGGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATCCCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCag < 1:374634/235‑1 (MQ=255) aGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGAACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCCGAATACCGCCACTTAATGCCAGCAATGGATCTAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGCAGTAAATACccgc > 1:146764/1‑238 (MQ=255) ggAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATCCCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTCCTGCCAGCAATGGATATAAACCGGCGGGCAGGGCGAGTCGGTTGATCATTTGCAGTTGTAAATGAcccgc > 1:539148/1‑235 (MQ=255) tgggCGATTTGCCCCA‑GCCGGGGGTGCCTCTGAAATTTTTGCGGGCGTCCGTCGGGGTTGCGAGGGCGTCGA‑TC‑CCCCAGCAAAAATCAGCACAGTGACCCGTCAAGACTACCGCTCCTTTCCGGC‑CAGGTGTTAAATAAGAAAAACAGAATCCCGCCCCTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAg < 2:159241/237‑1 (MQ=255) aTGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCaa > 1:859735/1‑238 (MQ=255) tGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAg > 1:889056/1‑238 (MQ=255) tCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCCATGCGGTTGATCATTTGCAGTAGTAAATAACCCCCGCCAAGACCTATTACAATGACCAGACCAAAtttgtg > 2:1052428/1‑235 (MQ=255) aaattttttGGAGG‑TGCCGTGGGGGTTGGCAAAGGGGCGG‑TTCCCCCAGAAAAAACCCGAACAAAACCCCCGCCAAAACCCCCCCACCTCCAAGCGCAGTAGTT‑AATGAAAAAAACAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGc < 2:1322422/234‑1 (MQ=255) gTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGc > 1:131717/1‑111 (MQ=255) gTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGCCAATGAAAATCAAGc > 1:801918/1‑239 (MQ=255) gTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGCCAATAAACAcccccc > 2:938304/1‑236 (MQ=255) gTTGCAAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATCCCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGc < 2:131717/111‑1 (MQ=255) gCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCag < 1:834482/71‑1 (MQ=255) gCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCag > 2:834482/1‑71 (MQ=255) gCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGAt > 1:968864/1‑150 (MQ=255) ggCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTa > 1:1254618/1‑180 (MQ=255) ggCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGCAAATCCAACTAATAtttcc > 2:1098891/1‑235 (MQ=255) ggCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCAAGCTAATATTGct > 1:139983/1‑238 (MQ=255) gcta‑TT‑CCCCAACAGAAAACCGCAAAAATCCCCCGCAAGAATCCCGCTACCTTCAAGCGCAGTAGTT‑AATAAAAAAATCAAAATCCCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCCAGCTAATATTGct < 1:291434/234‑1 (MQ=255) tttaccccAGAAAAAACCCCCACAAACACCCCGACAAAATCCCGTGCCCTCCCAGCGAATTAGTA‑AATAAAAAAACCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCCAGCTAATATTGCTCTCa < 1:1254934/234‑1 (MQ=255) cagcagAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTaaa > 1:822823/1‑148 (MQ=255) aaaaCCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCCAGCTAATATTGCTCTCATGATGCTGGatca > 1:414870/1‑239 (MQ=255) cacaGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCACGACCACTTACAATGCCCCGTCCAAATTGATGCAGAATATCGACAAAGAACATCCAGCTAATATTGCTCTCATGATGCTGGGAAATCGCaaa > 2:894562/1‑238 (MQ=255) cacaGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCCAGCTAAAATTGCCCTCATAATGCTGGATCAACGCAAt > 2:215469/1‑239 (MQ=255) ccgccgAAATCCCGTTACCTGCAAGCGCAGAATGT‑AAGGAAAAAATCAAAATGCCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCCAGCTAATATTGCTCTCATGATGCTGGATCATCGCAATTAGGGTAATc < 1:370265/239‑1 (MQ=255) cGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCACATTATTGCAGAATATCGACACTGAAAATCCAGCTAATATTGCTCTCATGATGCTGGATAATCGCAATTAGGGTAATc > 1:66631/1‑238 (MQ=255) aGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGCCAATAAACATCCAGCAAAAATTTCTCTCTGGATGCGGGGTCAACGCATTTAGGGGaacagc > 2:495324/1‑232 (MQ=255) aGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGAc > 2:477289/1‑176 (MQ=255) aGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGAAGAAAATCGCAAATGCACATCAAGCTAAAATTCCTTCCATGATGCTGGATCATCGCAATTAGGGTAATCTTCaa > 2:444345/1‑238 (MQ=255) aGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGGAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTTGTGCAGAAAATCGACAATGAACATCCAGCTAATATTGCTTTCATGTTACTGGAAAAACAAAATTAGGGAAATCGGCaa > 2:710071/1‑238 (MQ=255) aGAATACCGCTACCTTCCAGCGCAGTAGTA‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGAc < 1:477289/176‑1 (MQ=255) | AGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCA‑GCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGA‑TT‑ACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTT‑AATGAGAAAATCAGAATACCGCCACTTAATGCCAGCAATGGATATAATCCGGCGGGCAGGGCGATGCGGTTGATCATTTGCAGTAGTAAATAACCGCCGCCAAGACCTATTACAATGCCCAGACCAAATTGTTGCAGAATATCGACAATGAACATCCAGCTAATATTGCTCTCATGATGCTGGATCATCGCAATTAGGGTAATCGTCAG > NC_000913/1241104‑1241570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |