| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,706,790 | C→A | 9.9% | T148K (ACG→AAG) | rsxB → | SoxR iron‑sulfur cluster reduction factor component; putative iron‑sulfur protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,706,790 | 0 | C | A | 9.9% | 168.0 / 13.1 | 62 | T148K (ACG→AAG) | rsxB | SoxR iron‑sulfur cluster reduction factor component; putative iron‑sulfur protein |
| Reads supporting (aligned to +/- strand): ref base C (20/36); new base A (4/2); total (24/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.61e-01 | |||||||||||
AAAATCAACCGTTGCGCCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCA > NC_000913/1706555‑1707025 | aaaaCCACCCGTTGCGCCCAAGGGGGGGAAGGTGGGATG‑TTAAAAATGCCCGAGTTGGTTAAGGGCGGGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACggg < 2:1003536/239‑1 (MQ=255) tCACCCGTTGCCCCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGc < 1:994761/239‑1 (MQ=255) ccccccGTTTCCCCCCGGGTGGGGAAGCT‑TGGTGTGTAAAAATTGCCGGGTTGCTTAATGTGGAGCCGCCGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGc < 2:724693/235‑1 (MQ=255) cgtgtcgcCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATGTCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAAttt < 1:1313446/234‑1 (MQ=255) gcCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATgtgt < 1:381476/239‑1 (MQ=255) tGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATcc < 1:1172238/237‑1 (MQ=255) g‑CTAAAAATTGCCGAGTTGCTTAATGGCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAAt < 1:492845/208‑1 (MQ=255) cggtgtGCTTATGGGCGGGCCGGAGCCGGTGGGTGGGGAGGCGGAAGGGATAACGCCTGCGGGGATGGGGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAAc < 2:117544/234‑1 (MQ=255) aggCTTAATGGCGGGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGt < 1:1199852/237‑1 (MQ=255) tttAAGGTCGGGCCGCAGCCGCTGGATGGGGAAGGGCAAGGGAAAACGCCGGGGGGGATGGGGGCGGTTATTGAAGAAAATAACTGTATTGGCTGCAATAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGc < 2:1053139/238‑1 (MQ=255) agccgcagccgcTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGGATTCAGGCGTGTCCGGGAGACCCCATCGGTGGCGCTCCCCATGCCATTCATACGGTAAATGGGGATCTCTTTCCGGGCTGCAATTTATGTGTTTGTCACTGCCAGACCACCCGAATCTCGTTGCAACCGGGCGCAAAAaca > 2:1199852/1‑236 (MQ=255) gccgcagacgcTGGATGGCGAAGCGAAAGAGATAACGGCTGCGCGGATGGTGGTGGTTATTGATGAAAATAACTGTTTTGGCTGCAATAAATGTAGTCCGGCGTGTCCGGTAGACGCCCTCGTTGGCGATACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAATCACCt < 2:400386/238‑1 (MQ=255) cgcTGGATGGCGAAACGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAAGGTATTCAGGCGGGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTcc < 2:1297133/236‑1 (MQ=255) gATGGGGAATCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAAt < 2:929960/238‑1 (MQ=255) aGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTg < 1:894092/238‑1 (MQ=255) cgcAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGGAATGAGTGATCTCTTTACGGGCTGCCATTTATTGGTTGTTCCTGTCCCCACGCACTCAATCTCGTTGCAACCGGGCGCCGAAACACCTGACCCCCGGAAATGGGactggcaa > 2:893394/1‑232 (MQ=255) gcAAGAGATAACGCCTGGGGGGTTGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTAGTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTTCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGaa < 1:627525/237‑1 (MQ=255) tAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTcc < 1:246943/238‑1 (MQ=255) ccccTGCGCGGTTTGTTGGTTTTTTTGTTGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTTCCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTg < 2:584606/237‑1 (MQ=255) gtgtgtgtggtggCGGTTTTTGATGAAAATAAGTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTGGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTAt < 2:44873/232‑1 (MQ=255) tgggttttttGATGAAAATAACTTTTTTGGCTGGCCTAAATGTTTTGAGGCGTGTTCGGTAGACGCCCTCGGTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTg < 2:745665/230‑1 (MQ=255) ttactggttaaaaTGACTGTCATGGCCGCACTAAATTTATTCAGGCGTGTCCGGTAAGCGCCATCGGTGGCGCTACCCGTGGCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAaca < 1:270953/229‑1 (MQ=255) ttttGATGAAAATAACTGTGTTGGCTGCACTAAATGGATTCAGGGGTGTCCGGTTGACGCCATCGGTGGCGCTACCCGTGCCATTGATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACAcc < 2:461951/237‑1 (MQ=255) tgatgaAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTccc > 1:1005842/1‑226 (MQ=255) tgatgaAAAAAACTGTATTGGCTGCCCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTccc < 2:1005842/226‑1 (MQ=255) tatgaAAATTATTGTTTTTGTTGGCCTAAATGTATCCCGGTGGTGCCGGTAGGCGCCATCGTTGGCCGTACCCTTGCCATGCATACGGTAATGAGGTATCTCTGGACGGGCTTCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑ttc < 2:405185/238‑3 (MQ=255) gaAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGAACCCTGGAAATGGGATCTGAACACCATTCCCGGGCGGTACATTCCCGTGGAacacacagctta > 2:865718/1‑231 (MQ=255) cTGTACTGGCTTCCCTCAATGTATTCAGGGTTGTCCGGTAGACGCCATCGTTGGCGCTATCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCGCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAGATGGGATCTGAACACCATTCCCGTCCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATtc < 1:497421/239‑1 (MQ=255) ttGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGc > 2:947143/1‑239 (MQ=255) gCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGCCTCCTGGCAATTGGATCTGAACACCATTCCCGTGCGGATCATTCCCGTGGCACCACA‑TGCTTAATTTTTTTACAGCAtt > 2:123356/1‑239 (MQ=255) tGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCTTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAAAACCCTTCCCGTGCGTTCCATTCCCCGGGAACACCA‑TCCTTAAATTATTTCCTGCCTTcc > 2:570517/1‑238 (MQ=255) aCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTc > 2:288992/1‑184 (MQ=255) aCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTc < 1:288992/184‑1 (MQ=255) aCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTAGCATTCCCGTGGAACACCA‑TTCTTAAGTTATTCTCTGCATTCAGaa > 1:784338/1‑239 (MQ=255) aCTAAAAGTTTTCAGGCCTGGCCGGTAGACGCCATCGTTTGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGa < 1:1305046/238‑1 (MQ=255) aTGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGCACATGGATTCTGAACACCATTCCCGAGCGTATCTTTCCCGTGGAACACAC‑ACCTTAAGTTATTTTCTCCTTTCaaaaaaaaa > 2:1128855/1‑238 (MQ=255) cAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGACCACCATTCCCGGGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTATGAATTCCGAAaaaataaaa > 2:986705/1‑236 (MQ=255) cAGGCGTGGTCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCCTACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACCCCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCt < 1:49687/239‑1 (MQ=255) tgtCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGAtt > 1:123922/1‑239 (MQ=255) tgtCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCGGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTCCATCTCGTTGCAACCGGTCGCAGAACCACCTGACTCCTGGAACTGGGATCTGACCCCCATTCCCGTGCGTATCTTTCCCGTGGAACACAC‑TCCCTAAGTCATACTCTGCATTCAGAaaaaaaaaaaaaggggat > 2:608956/1‑230 (MQ=255) tCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGAACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAAAACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGCTTTc > 1:486360/1‑239 (MQ=255) tAGACGACATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTGGCAGAAACACCTGACTCCTGAAACTGGGAACTGAAAACCATTCCCGTGCGTATCATTCCCGTGGAAAACCA‑TGCTTAAGTTATTCTTTGCATTACGAAAAAATAAAATCAGGGATTTAAAcgg > 2:677456/1‑239 (MQ=255) cGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggcgg < 1:865718/238‑1 (MQ=255) cGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACggcggc > 1:1208202/1‑239 (MQ=255) gCCATCGTTGGAGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGGGCCCGACGCACGGCATCTCGTTGCAACCGGTCGAAGAAACACCTGACTCCTGGAAATGGGAACTGGACACCATTACCTTGCGTGTCCTTCCCGTGGAA‑ACCACTGCTTGAGTTATTATCTGCATTCAGAAAAAATAACATCTGGGATTTCacaggaggc > 2:1028373/1‑230 (MQ=255) tGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCAtccatcca < 1:947143/239‑1 (MQ=255) ggCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCAc < 1:662064/239‑1 (MQ=255) ccGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAATCGCCTGGCTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCAATCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATg < 1:422077/239‑1 (MQ=255) aTGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAAcc < 1:123356/238‑1 (MQ=255) atttgtgaaTGAGGTATCCCTGTACGGGCTGCAATTTATGTGTTGACCCGTGCCCGACGCACTGAATTTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTCTTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAg < 1:1246586/230‑1 (MQ=255) aCGGTAATGAGTGAGCTCTGTACGGGCTGCAATTTATGTGTTCATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACCCCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCa < 1:1028373/239‑1 (MQ=255) cGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCaa < 1:570517/239‑1 (MQ=255) cGGTAATGAGTGATCTCTGGACGGGCTTCAATTTAAGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCaa < 1:1128855/239‑1 (MQ=255) cGGTAATGAGGGATCTCTGTACGGGCTTCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCaa < 1:986705/239‑1 (MQ=255) tGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggc > 1:845455/1‑198 (MQ=255) tGAGGGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggc < 2:845455/198‑1 (MQ=255) tGAATGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATGCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAACAAATAAAATCTGGGATTTCAACGGCGGACTCCCTCCACCGGAGATGAAAACCCAGGCCAACggga > 1:842833/1‑236 (MQ=255) aGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGTAGATGAAAACCAAGTCCAACGGTaca > 1:605377/1‑238 (MQ=255) tctcTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATTTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGCATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAATTAAACTATGGGATTCCAACAAGGGCACCCTCACCCCGGGGATTAAAACCCAACCCAAAggacaaccccc > 2:1155189/1‑229 (MQ=255) tGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGGACACCCCTgccc > 1:260953/1‑236 (MQ=255) tGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAACATAAAATCTGGGATTTCAAAGGGGGCATTCATCAACCGGAAATGAAAACCCAGTCCAAAGGGAAACCCCTgggcg > 2:1363051/1‑238 (MQ=255) gTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTAAACGGCGGCATCCATCCACCGGAAGTGAAAACCCAATCCAACGGAACAACCCTGCCCCa > 2:197785/1‑239 (MQ=255) | AAAATCAACCGTTGCGCCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCA > NC_000913/1706555‑1707025 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |