| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,296,060 | C→T | 12.9% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 12.9% | 145.5 / 16.5 | 78 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (35/31); new base T (3/7); total (40/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.16e-01 | |||||||||||
CAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAA > NC_000913/4295823‑4296285 | cAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAAc > 1:130327/1‑238 (MQ=37) aTGTGGGAATGCCTGATGCGACGCTTGCCGGGTCTTATCAGGCCTACGGCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCTCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGcc < 1:52738/239‑1 (MQ=19) tGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGCCGTTTACGCCGCAT‑CCGCCATCAATGCCTGATCCGACGCt > 1:377180/1‑238 (MQ=9) gATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATTCCTGCTGCGACGCtt > 1:113134/1‑238 (MQ=14) ggCGACTGTTGTCGCGTTTTACCGGGCCTGAGCCAGACAGCGCAATTGCCTTATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGcc < 1:305514/238‑1 (MQ=11) gcggtttGCCGCGTTTTATCGGGCCGACGCCAGGCAGCGCATTAGCCTGATTTAGCGTGATTTTGTAGGGCGGATAAGGCGTTTAGGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCcgcg < 2:611938/234‑1 (MQ=11) cGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGAAATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGt < 1:376522/238‑1 (MQ=18) acagtGCCGCGTCTTATCAGGCCTGCGCCAGACACGGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGt < 1:459422/234‑1 (MQ=255) tttttttttgggCCTGCGCCAGACGTCGTAATAGCATGATTTAGGGTGTTTTTGTAGGTCGGATAAGGCTTTTATGCCGCATCCGACATCAACGCCTGATGCGACTCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:348562/229‑1 (MQ=11) gTCTTATCAGGCCTACGGCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACAGCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:817675/238‑1 (MQ=18) gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATGTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:561622/238‑1 (MQ=18) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGCCCCTTGCGCCGGCTTTTCAGGCCt > 1:1069500/1‑239 (MQ=255) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTACCTTGATTTTGTAGTTCGGATAAGGCGTTTA‑GGCGCATCCCGCCATCATGGCCTGTTGCGCCGCTGGCCCCGGCTTATccgcccaactt > 2:509343/1‑229 (MQ=11) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTTTAGGTCGGATAAGGCGGTTACGCCGACT‑CCGCCACCAATGCCTGATGGCACCCTTGCCGCGGCTTACAAGGccctgt > 2:459422/1‑234 (MQ=11) cgaggCCAGACAGCGGAATAGCCTTGTTTGGCGTGATTTTGCAGGTCGGATAAGTCGTTTATGCCGCCTCCGACATCAACGGCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 1:44047/234‑1 (MQ=11) aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc < 1:914969/239‑1 (MQ=33) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCCAGGCTTACCGCGTCTTATCAGGCCTACGCCGGACACAGAAAAAGCCTgg > 2:1069373/1‑238 (MQ=11) tggCCTGATTTAGCGTGATTTTGTAGGTCGGATGAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAg < 1:998268/237‑1 (MQ=18) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACGTCAACGCCTGCTGCGCCGCTTACCGCGTCTTATCAGGCCTACCCCACACCGCGCAAAGGCTTGTTTTacctg > 2:569245/1‑235 (MQ=11) gtttttttTGGGCGGGTAAGGGTTTTTTTGCGCGTCCGACATCAACCGCTGATGGGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACGGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGGCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGt < 2:923251/236‑1 (MQ=11) ttgggggTCGGATAAGGCGTTTGCTCCCGTTCCGCCATCAACGCCGGATGGGACGTTTAACGCGGTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGAt < 2:130327/234‑1 (MQ=11) tAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:343050/185‑1 (MQ=35) tAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 2:343050/1‑185 (MQ=35) cGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGt > 2:226246/1‑226 (MQ=21) cGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGt < 1:226246/226‑1 (MQ=21) ttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCCGATGCGCCGCTTGCCGCGTCTTATCAGGCCTACCCCAACCAGGCCACTAGCCTGTTTTAG‑GTGGTGTTTTTAGGTC‑GGGAAAGGGGGTTAGGcccgaacc > 2:561622/1‑233 (MQ=11) tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACACCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGCC‑GGATAAGCCGTTTATGCCGCAccc > 1:453842/1‑238 (MQ=255) gCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCTATAGCCTGGTTTAGCTGCAT‑TTTCGCGGTC‑GGAACTGCCGTTTATGCCCCCTCCCACATCa > 2:471778/1‑239 (MQ=11) aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGCCGCTTGCCGCGTCTTATCAGGCCTACGTCAAACAGCGCAATAGCCTTCTTTAGCGTCAT‑TTCTTGGTTC‑GGAAAAGTCGCTTACACCGCATCCGACATaaaa > 2:14422/1‑238 (MQ=11) ccGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:788579/157‑1 (MQ=35) atgCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCg > 1:1071756/3‑238 (MQ=14) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 2:788579/1‑157 (MQ=35) gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa > 2:128194/1‑136 (MQ=37) gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGACTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:128194/136‑1 (MQ=25) gtgggACGGTTAACGCGTCTTATCAGGCCTACGCCGGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAAGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa < 1:385412/235‑1 (MQ=255) aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAGGCTTa > 1:278993/1‑238 (MQ=37) tGCGACGATTAACGGGTCTTATCAGGCCTAAGCCAGACAGCGGAATTGCCTGAATTAGCGTAATTTTGTAGGCCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa < 1:75618/238‑1 (MQ=11) tcccctttttttCAGGCCTACCCCAGACGCGGCAATGGCCTGATTTAGCGTGTTTTGGTAGGTGGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATc < 2:927175/228‑1 (MQ=11) cttCTTTTCAGGCCTACGCCAGGCGGCGAAATGGCCTTATTTGGCTTGATTTTGTAGGTCGGATAAGGCTTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc < 2:458111/237‑1 (MQ=11) cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGCCTTATCAGGCCt > 1:125978/1‑238 (MQ=18) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:165501/115‑1 (MQ=39) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGCGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATCTGACGCTTAACGCGTCTTATCAGGCTCACGCCAgcc > 1:96697/1‑237 (MQ=255) ccTACGCCAAGCAGGGAAATTGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCCTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGa < 1:1004403/237‑1 (MQ=255) ccAGACTGCTGAATTGCCGGATTTAGCGGGATTTTGTAGGGCGGAGAAGGCGGTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCaa < 1:536956/239‑1 (MQ=11) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCGACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 2:916664/1‑100 (MQ=255) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:916664/100‑1 (MQ=255) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:246002/1‑100 (MQ=40) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:143737/100‑1 (MQ=40) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 1:371175/1‑110 (MQ=40) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa < 1:610066/118‑1 (MQ=39) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATaa > 2:729622/1‑153 (MQ=35) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATg < 1:658692/163‑1 (MQ=35) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATg > 2:658692/1‑163 (MQ=35) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAAAGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTTGCGTGTT‑TTTGTAGACC‑GGCTAAGGCCTTTACGCCGCCTCCGCCATCCACGCCTTGTCCGACGCTTAACCCGCTTTTTCAGGCCCACGCCACCCAGAGCCACAACCTGa > 2:97669/1‑239 (MQ=11) ctattgCCTGGTTTGGGGTGATTTTGGAGGTCGGATAAGGCGTTTACGGCGCAT‑CAGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAtt < 2:1060228/234‑1 (MQ=11) aaTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGc > 1:546697/1‑97 (MQ=18) tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt > 2:99307/1‑198 (MQ=34) tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt < 1:99307/198‑1 (MQ=34) tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATACGGCGTTTATGCCGCATCCGACCTCAACGCCTGATGCGACGCTTAACTCGTCTTATCAGCCCTACCCCAGACACCGAAAAAGCCTGCTTTACCGGGa > 2:867043/1‑239 (MQ=11) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAGGCTTAACGCGTCTTTTCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTCACCGAGCTTTTGAAg > 2:280193/1‑239 (MQ=11) gtatgtGTAGGGTGGAGAAGGCGTTTCCGCCGCAT‑CCGAGATCAACGCCTGATGCGACGGTTGCCGGGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTCGGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt < 1:1075558/234‑1 (MQ=11) tCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCaa < 1:627602/199‑1 (MQ=34) cGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAATGCCTGATGCGCCGCTTAACGCGTCTTATCAGGCCTACGCCAGCCGGCGCATAAGCCTGATTTCGGGTGGTTTTTTAGGCCGTAAAAGGCgat > 2:709676/1‑237 (MQ=11) cGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGCCGCTTAACGCGTCTTATCAGGCCTAAGCCAGACAGCGCATTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAACGCGtt > 1:304860/1‑239 (MQ=16) cGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa < 1:254901/216‑1 (MQ=34) cGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa > 2:254901/1‑216 (MQ=34) cGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGGCTTATCAGCCCTACGCCCAACAGCGGAATACCCTGATTTAGCGCGATTTTGAAGGTTGGATAAGGAGtt > 2:204183/1‑239 (MQ=11) cGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAtt > 2:627602/1‑199 (MQ=34) tACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGt < 2:490927/44‑1 (MQ=12) tACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:946679/54‑1 (MQ=9) tACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGt > 1:490927/1‑44 (MQ=255) tACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:946679/1‑54 (MQ=255) tACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTCCGCCCTCCAGCCCAAAAGCCTTATTCTGCGTGATTTTGTATGTCGGATAAGGCGTTTAGGCACCATccc > 2:796671/1‑238 (MQ=11) tACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCACCGCAATAGCCTACGTTAGCGGGATTTTGTAGGTCCGATAAGGGGGTTCAGCCGCATCCg > 2:1087986/1‑239 (MQ=11) tACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACACCGCAATAGCCTTATTTAACGTGATTTTGTAGGTCGGATAAGGCGGTTACGCCgaactcg > 2:369136/1‑233 (MQ=255) tACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTg < 1:668385/95‑1 (MQ=18) cgcacgcggcATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATc < 1:792649/230‑1 (MQ=9) cAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCTCGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATccccaataaa > 2:931910/1‑231 (MQ=255) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa < 2:23182/127‑1 (MQ=32) | CAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT‑TTTGTAGGTC‑GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAA > NC_000913/4295823‑4296285 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |