Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 541,102 A→T 15.4% M180L (ATG→TTG)  ybbY → putative uracil/xanthine transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913541,1020AT15.4% 106.1 / 4.2 49M180L (ATG→TTG) ybbYputative uracil/xanthine transporter
Reads supporting (aligned to +/- strand):  ref base A (32/9);  new base T (4/4);  total (36/13)
Fisher's exact test for biased strand distribution p-value = 1.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01

TCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGTCTGGTAAATATCAGCAATACCTA  >  NC_000913/540890‑541334
                                                                                                                                                                                                                      |                                                                                                                                                                                                                                        
tctcCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGAGGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGAt                                                                                                                                                                                                                                         <  1:158171/214‑1 (MQ=255)
       cGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGTTGTGCCTGGAACTGGGGTTGTTTATCTTCCTg                                                                                                                                                                                                          >  1:1072995/1‑238 (MQ=255)
            tGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCa                                                                                                                                                                                                     >  1:17854/1‑238 (MQ=255)
              aCGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCTGCCTCT‑CGGGGGCGGGGTGGTGCCTGGGTCTGGGCATGATTATCTTCCTCCCGCAACg                                                                                                                                                                                                  >  2:551813/1‑239 (MQ=255)
                              ttAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGGGATTTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCCACCTTTTTCCCGtttgggc                                                                                                                                                                                  >  2:198878/1‑234 (MQ=255)
                                     aTTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGGGATGTGCCTGGTACTTGCGGTGATTATCTTCCTGCCGCCACGTTTTGCCCGTTATGGCCGGCTgg                                                                                                                                                                           >  2:868530/1‑239 (MQ=255)
                                      ttAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGTTGTGCCTGGTACTGGCGATGGTTATCTTCCTGCCCCCACGTTTTGCCCGTTAAGGCCCGCTGGt                                                                                                                                                                          >  2:840131/1‑239 (MQ=255)
                                               cGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGTCGCTGCTTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCCGCTGGTCGGCTCCAt                                                                                                                                                                 >  1:397360/1‑239 (MQ=255)
                                                           ttATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCCCCCTAACCggttggtt                                                                                                                                                     >  1:1084296/1‑239 (MQ=255)
                                                                   gCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGttgttggtgg                                                                                                                                             >  1:127180/1‑235 (MQ=255)
                                                                   gCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTgg                                                                                                                                              >  1:896022/1‑238 (MQ=255)
                                                                   gCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGGGGCGGCGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGGTATGGCCGGCTGGTCGGCCCCCTAACCGGCTGGTGGTTGTGGt                                                                                                                                             >  2:346809/1‑239 (MQ=255)
                                                                   gCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGGGCCGGTGATGTGCCTGGTACTGGGGCTGAATATCTTCCTTGCGCAACGGTTTGCCCGTTATTGCCTCCTGGTCGGGACCCAAAACGCCGGGttgttggtgg                                                                                                                                             >  2:1018450/1‑235 (MQ=255)
                                                                     cGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCATTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGAGCCTTGTACTGGCGCTGATTAGCTTCCTGCGGCAACGTTTTGCCCGTTATGTCCTGCTGGTCGGCACCATAACCGGCTGCTTGTTGTGGt                                                                                                                                             >  1:1029973/1‑237 (MQ=255)
                                                                     cGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGGCTGCTGGTAGGGACCATAACCGGCTGGTTGTTGTGGt                                                                                                                                             >  1:275299/1‑237 (MQ=255)
                                                                     cGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTACTTGGTAATGGCGATGATTATCTTCCTGCCGCAACCTTTTGCCCGTTATGGCCCGCTGGCCGGCACCCTAACCGGGTGgttgtttgggt                                                                                                                                             >  2:83946/1‑232 (MQ=255)
                                                                     cGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGCGTTGTGCCTGGTACTGGCCATGATTACCTTCCTGCCGCCACGGTTTGCCCGTTATGTCCTGCTGGTCGGCACCATAACCCGCTGGTTGTTTTggg                                                                                                                                             >  2:808499/1‑236 (MQ=255)
                                                                       tCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGGGGTACtt                                                                                                                                         >  1:301946/1‑239 (MQ=255)
                                                                                           gTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCggca                                                                                                                      >  1:351448/1‑235 (MQ=255)
                                                                                           gTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCAc                                                                                                                      >  1:791179/1‑238 (MQ=255)
                                                                                           gTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCC‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCAc                                                                                                                      >  1:784595/1‑238 (MQ=255)
                                                                                               aTGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGc                                                                                                                  >  1:59975/1‑238 (MQ=255)
                                                                                               aTGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGc                                                                                                                  >  1:112741/1‑238 (MQ=255)
                                                                                               aTGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGGGGTACTTTTGCTTTCCTTCTTCGCACTCGc                                                                                                                  >  1:1000667/1‑238 (MQ=255)
                                                                                                tgtggggCGCGCAGTTGACCATTATCTTTTTCAAG‑GGTATGCTGGGGCTGCCGTTTGGCATAGCCGCCCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGct                                                                                                                 <  1:868530/234‑1 (MQ=255)
                                                                                                tGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTCCTTTTGCTTTCCTTCTTCGCACCCGct                                                                                                                 >  1:636138/1‑238 (MQ=255)
                                                                                                    gggCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCg                                                                                                            >  1:101651/1‑239 (MQ=255)
                                                                                                     ggCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCCACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTGCCACTCGCTCTCCgg                                                                                                           >  1:11696/1‑239 (MQ=255)
                                                                                                      gcgcgcAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGACGATTATCTTCCTCCTGCAACGTTTTGCCCGGTTGGGGCTGCGGGTTGGCACCCTAACCGGGTGGTTGTTGTGGGGCTTTGGTTTTCCTTC‑TCTCACTCGcgccgccggg                                                                                                         >  2:272589/1‑230 (MQ=255)
                                                                                                         cgcAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAAGGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAg                                                                                                       >  1:361713/1‑239 (MQ=255)
                                                                                                                tgcccattattttttCAAAGGGTATGGTCGGGCTGCGGTTTGGCATGGCCGACCAGATTTTTAAATTTCGGTTCCCGCCGTTCGCGCTCT‑CGGTGGCGGTGTTGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCa                                                                                                  <  1:840131/228‑1 (MQ=255)
                                                                                                                      tATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTTTGGGACTTTTGCTTTCCTTCTTGGCACCCCCCCTCCGGGGGGTTGAACgggaggg                                                                                          >  2:401240/1‑235 (MQ=255)
                                                                                                                            tttCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCCATCGCTCTCCGGTGAGTTGCCCTGGCAGTGGTTc                                                                                     >  1:680580/1‑238 (MQ=255)
                                                                                                                                aaa‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTTTGGCCTGCTGGTCGGCACCATACCCGGCCGGTTGTTGTGGTACTTTTGCTTTTCTTCTTCCCACTCGCTCTCCGGTGAGTGGCACTGGCAGGGGGTCCCGcc                                                                                >  2:513455/1‑238 (MQ=255)
                                                                                                                                        tGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGCACTTTTGCTTTCCTTTTTCGCCCTCGCCCTCCGGTGGGTTGCACTGGCAGGGGTTCCCGCCCGGCAgg                                                                         >  2:570180/1‑238 (MQ=255)
                                                                                                                                               gCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCCGTGGCgggg                                                                  >  1:176633/1‑237 (MQ=255)
                                                                                                                                                          gCATAGCCGACCTAATTTTTAAAATGTGGTTACCGCCGTTCGCGCTCT‑CGGTGGGGGGGATGGGCCTGGTACTGGGGGTGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGcc                                                        <  1:957167/238‑1 (MQ=255)
                                                                                                                                                                   aCCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGcc                                                                                                                                                                                                                                    >  1:976385/1‑57 (MQ=255)
                                                                                                                                                                   aCCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGcc                                                                                                                                                                                                                                    <  2:976385/57‑1 (MQ=255)
                                                                                                                                                                    cccGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTg                                                                                                                                                        >  1:787365/1‑132 (MQ=255)
                                                                                                                                                                     ccGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCCTAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCACTCCGGTGGGTTGCCCTGGCAGGGGTTCCCGCTCGGCGCGGGCGGGGGTTTTTTGCCgggggttttttt                                            >  2:887316/1‑230 (MQ=255)
                                                                                                                                                                            taaaaaTTCGGTTCCCGCCGTTTCCGCTTT‑CGGTGGCGGGGTTGTGCCTGGTACGGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGAcggcg                                     <  1:1013575/237‑1 (MQ=255)
                                                                                                                                                                              aaaaTTTGGTTCCCGCCGGTCCCG‑TCTCCGGTGGCGGTGTTGTGCCTGGTTCTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGt                                   <  1:401240/239‑1 (MQ=255)
                                                                                                                                                                                        tcccggcgTTCGCTCTCG‑CGGGGGCGGTGTTGTGGCGGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGt                         <  1:272589/237‑1 (MQ=255)
                                                                                                                                                                                                   gcgcTTT‑CGGTGGCGGTGATGTGCCTGGTACGGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGTCTGGTAAatat              <  1:778443/239‑1 (MQ=255)
                                                                                                                                                                                                   gcgcTCT‑GGGTGGCGGTGATGGTCCTGGTCTTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGTCTGGTAAatat              <  1:942646/239‑1 (MQ=255)
                                                                                                                                                                                                   cggcTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGTCTGGTAAatat              <  1:586784/237‑1 (MQ=255)
                                                                                                                                                                                                          ccGGTGGGGGGAATGGTCCTGGTACTGGCGTTGATTACCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGTCTGGTAAATATCAGCaa        <  1:808499/238‑1 (MQ=255)
                                                                                                                                                                                                                 cGGTGATGGTCCTGGTGCGGGCGGTGATTCTCTTCCTGCCGCAGCGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGGTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGTCTGGTAAATATCAGCAATACCTa  <  1:488804/238‑1 (MQ=255)
                                                                                                                                                                                                                      |                                                                                                                                                                                                                                        
TCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAA‑GGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCT‑CGGTGGCGGTGATGTGCCTGGTACTGGCGATGATTATCTTCCTGCCGCAACGTTTTGCCCGTTATGGCCTGCTGGTCGGCACCATAACCGGCTGGTTGTTGTGGTACTTTTGCTTTCCTTCTTCGCACTCGCTCTCCGGTGAGTTGCACTGGCAGTGGTTCCCGCTCGGCAGTGGCGGTGCTTTGTCGCCGGGAATTATTCTGACGGCGGTGATTACAGGTCTGGTAAATATCAGCAATACCTA  >  NC_000913/540890‑541334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑