| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,976,691 | T→C | 13.3% | E150G (GAG→GGG) | motA ← | proton conductor component of flagella motor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,976,691 | 0 | T | C | 13.3% | 170.9 / 3.0 | 75 | E150G (GAG→GGG) | motA | proton conductor component of flagella motor |
| Reads supporting (aligned to +/- strand): ref base T (26/36); new base C (4/7); total (30/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCT > NC_000913/1976453‑1976924 | cTGACTAAAAACGGGCCCTAATGGGGAAATAAACCCGTAAGCCCACAAAATGCCGAAGAAAGCCCCCACCCACGCAT‑GTGCGATAAGCGCCCCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAAtct < 2:183351/239‑1 (MQ=255)cTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGGGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAAtct < 2:173457/239‑1 (MQ=255) gTAAAACAGTTGGTAATTGGGAAATAAATCCGTAAGCAAATAAAAGGCCGAAGAAAGTCCCCACCATCGCAA‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCGAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTca < 1:822005/239‑1 (MQ=255) aCAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGCCCCCACCATCGCAT‑GGGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTcatccat < 1:270800/239‑1 (MQ=255) tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATCCCAAACGCCGGACGTGAGTCCCCGACCACGGCCAGACCGTTCGCCGGGACTTCTGCCCCCCTTTCGGGCGGCCCAATCCCTTctcccccccaa > 2:1064254/1‑229 (MQ=255) tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCTTCaga > 1:791784/1‑239 (MQ=255) tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCCCTTCATCCATCata > 1:869467/1‑237 (MQ=255) tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGGGAGTCCCCGACCAGCGCCACACCGTTCGCCGGGCCTCCTGCCTCGCTTTCGTCCGCCCCCACCCCTTcatcccccaca > 2:162886/1‑233 (MQ=255) cGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTCCAGCCGCAACAATACCAAACGCCGGAAGTGGGGCCCCGACCAGCCCCGACCTGTTCCCCGGGACTTCTCCCCCCCTTTCCTGTGTCCCAAACCCTTctcccataaaca > 2:256974/1‑234 (MQ=255) aataataCCGTAAGCCTAAAAAAGGCCGAGGAAAGTCCCCCCCATCGCAA‑GTGGCATAAGCGGACCCAGCCCGGCGGCAGGACGATCGGCTGAACCTAACGCGGGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa < 2:183392/239‑1 (MQ=255) aataaatCCGTAAGCCAATAAAAGGGCGAGGAAAGGCCCCCCCAGCGTCT‑GGGCGATAAGCGCACCCAGGCCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa < 2:133118/239‑1 (MQ=255) ataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGACTCGCTTTCGTGCGGCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGaa > 1:1050412/1‑239 (MQ=255) taaatCCGTAAGCCAAAAAAATGCCGAAGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAg < 1:656530/239‑1 (MQ=255) taaaccctgaaGCCAATAAAATGCCGAGGAAAGTCCCCCCCATCGCAT‑GGGCGAAAAGCCCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAg < 2:791784/230‑1 (MQ=255) taaacCCGTAAGCAAAAAAAAATCGGAGGAAAGTCCCCCCCATCGCAG‑GTGGGATAAGCGCACCCAGCTCGGGCGCAGGACGACCGGCAGAACCTACCGCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAg < 2:793684/239‑1 (MQ=255) atCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACCGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATCTCTTCATCCTTCAGCGCTTCGATTTCGAAGgtg > 1:1001015/1‑239 (MQ=255) acccGTAAGCCAAAAAAAGGCCGAGGAAACTCCCCCCCATCGCAT‑GGGCGATAAGGGCCCCCAGCTCGGCGGCAGGACGAACGGCTGAACCTAACGCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGgtg < 2:1050412/237‑1 (MQ=255) cAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc < 1:149888/239‑1 (MQ=255) cAAAAAAATGACGAGGAAAGTCCCCCCCCGCGCAG‑GGGCGAAAAGCGCCCCCACCCCGGCGGCAGGACGATCGGCGGAACCCACCGCGTGAACGACCCCCCGTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGGTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc < 2:565518/239‑1 (MQ=255) cAAAAAAAAGCCGGGGAAAGTCCCCACCATCTGATGGTGC‑AAAAGCGCCCCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGGGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGCCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc < 2:726264/239‑1 (MQ=255) aTAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGGTTTCATTTGAcc > 1:576600/1‑238 (MQ=255) agcgCCGGGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCCCGGCGGCAGGACGACCGGATGAACCTAGCGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCGGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGa < 1:1064254/236‑1 (MQ=255) aGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGCCTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCCCTGATAATCAg > 1:951344/1‑239 (MQ=255) ggAAAGTCCCCCGCATCGCAA‑GTGCGAAAAGCGGACCCAGCTGGGAGGCAGGACGATCGGCTGAACCTAGCGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAg < 1:115762/238‑1 (MQ=255) gaagggccccACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAgg < 1:917429/232‑1 (MQ=255) accaTCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCACTCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCCCCGATAATc > 1:758915/1‑239 (MQ=255) accaTCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCATGTGACCGCTGCTAATCAGGCGCAGATAATc > 1:45936/1‑239 (MQ=255) cGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCTCTTTCGAAGGTGTTCATGTGACCGCTGGTAATCAGGCGCAGATAATcgacgc > 1:1049661/1‑238 (MQ=255) cGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGCTTTCGAAGGGGTTCATGGGCCCGCTGATAACCAGGCGCAGATAATcgccga > 2:444792/1‑239 (MQ=255) gcagtggCGATAAGCGCCCCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGGGTGAACGACCCCCATTACAGCCGCAACAATCCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGAt < 1:444792/233‑1 (MQ=255) ctcttgtccgaaaGCCCCCCCAGCTCGGCGCCAGGCCGATCGGTGTAACCCAACCCGTGACCGACCCCGATTACAGCCGCAACAATCCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGAt < 2:134289/228‑1 (MQ=255) gCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCCACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGCTTTCGAAGGGGTTCATGTGACCGCTGATAATAAAGCGCAGATAATCGCGGAAAAAAta > 2:99381/1‑238 (MQ=255) ccatcaaGCCCCCCCAGCCCGGCGGCAGGACGACCGGCTGAACCTAACGCGTGACCGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATc < 2:919837/234‑1 (MQ=255) aGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGCTAATCGACGATAAAATCAAGCAt > 1:607148/1‑239 (MQ=255) gaCCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATGCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACg < 1:403048/238‑1 (MQ=255) cccACCCCGGGGGCCGGAGCACCGGCTGCACCTAAGGCGTGAACCACCCCCATTCCAGCCGCAAAAATGCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCCCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCt < 2:869467/239‑1 (MQ=255) ggcggcAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGa < 1:162886/239‑1 (MQ=255) cggcAGGACGATCGGCTAAACCGAACGGGTGAACGACCCCCATTACATCCGCAACAATACCAACCGCCGGAAGTGGGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAg < 1:1081966/238‑1 (MQ=255) gcAGGACGATCGGCTAAACCTAACGCTGGAACGACCCACATTACAGCCGCAACAATACCAAACGGCGGAAGTGAGTCCCCGGCCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGa < 1:675317/238‑1 (MQ=255) gtCGGCTTACCCCACCCCGGGAACCACCCCCATTCCCGCCGAAACAATCCCAAACGCCGGAAGGGAGTCCCCGACCAGCGCCAGGCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCGCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGt < 2:870335/238‑1 (MQ=255) gTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCAGAACGTTATCCGCAGGGATGCGTGGGTAGCTGGCGAAGCTATCg > 1:991703/1‑238 (MQ=255) ggAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGGGGCCCCGACCAGCGCCATGCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGct < 2:758915/238‑1 (MQ=255) gAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCGTCCATCAGAGCTTCGATTTCGAAGGCGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGCAGCTGGCGAAGATCTCGct > 1:160571/1‑238 (MQ=255) aaCGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGCGACCGCTGATAATCAGGCGCAGATAATCGACGTAAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGctc > 1:1056808/1‑238 (MQ=255) ccccccccATTCCACCCCCTACTATTCCAGACGCCGCGTGTGGTGCCCCGACCCGTGCCAGACTGTTCGCCGTGCCTTCTTCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCAGCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCa < 2:633304/236‑1 (MQ=255) tACCGCCCCAACAATCCCAAACGCCGGAAGTGAGTCCCCGACCAGGGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGAtttt < 2:991703/239‑1 (MQ=255) aGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCCCGAGGATGCGTGGGTAGCGGGCGAAGATTCCCCTCCCCCGGGGATTTTCaa > 2:768743/1‑239 (MQ=255) ccGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGGGAAGATCTCGCCCTCACGGGGATTTTCaaa > 2:537379/1‑237 (MQ=255) ccacaaaTCCCAAACGCCGGAAGGGGGCCCCCGACCAGCGCCAGGCTGTGCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATc < 2:756528/234‑1 (MQ=255) caacaaTACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATc > 1:793033/1‑238 (MQ=255) aacaaTCCCAAAGCCCGGAAGTGCGTCCCCGCCCAGGGCCAGACTGGTCGCCGGGACTTCTGCCCCGCTTTCGTGCGTCTCAATCTCTGCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATc < 2:98529/237‑1 (MQ=255) aaCGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGc > 1:98529/1‑237 (MQ=255) aaCGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGc > 1:756528/1‑237 (MQ=255) aaCGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATCCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGa > 1:1027016/1‑239 (MQ=255) gCCGGAAGTGAGTCCCCGACCGGCGCCAGACTGTTCGCCGGGACTTCGGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCAGCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGaaaa < 1:424272/239‑1 (MQ=255) gAAGTGGGTCCCCGGCCAGCGCCAGCCTTTTCGCCGGGACTTCTGCCCCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATc < 2:953905/239‑1 (MQ=255) gcgcCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCCCCACCGGGGATTTTCATTATCACGTTCCAGCGAAAAAATCCCCATCTACCGCGATTTc > 2:474789/1‑239 (MQ=255) cgcCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGAGGCGTGGGTAGCTGGGGAAGATCTCGCTCTAACGGGGATTTTCAAAATAAGGTTCCAGCGAAAAAATACCAACCTGCCGCGATTTc > 2:497836/1‑238 (MQ=255) gcctttCGCCGGTTCTTTCTCCTCCCTTTCGTGCGTCTCAATCTCTTCATCCATCAGGGTTTCGAGTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAAGCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATTTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCa < 2:425305/235‑1 (MQ=255) cttttCGCCGGGACTTCTGCCTCGCTTTCGGGCGTCCCAATCCCTTCATCCCTCAGAGCTTGGATTTCGAAGGTGTTCATGGGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCa < 2:793033/235‑1 (MQ=255) cttttCGCCGGGACTTCTGCCTCGCTTGTGGGCCTCTCAATCCCTTAATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGGGCCCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCa < 1:474789/235‑1 (MQ=255) ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCCCGGGGATTTTCAATATCCCGTTCCAGCGAAAACATCCCCATCTTCCCCGTTTTTCCCACCAACCg > 2:882177/1‑239 (MQ=255) ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGAGGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCg > 1:90843/1‑239 (MQ=255) cGCCGGGCCTTTTGCTGTGCTTTCGTTGGTCTCAATCCCTTAATCCGACAGAGCTTAGTGTTCGAAGGTGGTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGAt < 2:160571/239‑1 (MQ=255) cctgttttctggCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGGGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 2:1049661/228‑1 (MQ=255) cccggcttCGTGGGTCACAATCCCTTCATCCCACAGGGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 1:918220/233‑1 (MQ=255) cacGCTTTCGGGCGTCTCAATCGCTTCAACCAACAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 1:882177/237‑1 (MQ=255) cTCGGTTTCGTGCCGCTCAATCCCTTCATCCAACAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 1:486136/239‑1 (MQ=255) cTCGCTTTCGTGCGTCTCAATCTCATCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 1:768743/239‑1 (MQ=255) cTCGCTTTCGGTCGTCTCAATCTCTTCATCCATCAGGGCTTTGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 2:1001015/239‑1 (MQ=255) cTCGCATTCGGTCGTCTCAATCTCTTCATCCATCGATGCTTCGATGTCGAAGGTGTTCATGTGCGCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 1:584983/239‑1 (MQ=255) tctgtttCGGGCGTCCCAATCCCTTCATCCAACAGGGCTTCGATTTCGAAGGTGTTCATGGGCCCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGGTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca < 1:19466/234‑1 (MQ=255) cGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCTATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGa < 1:497836/239‑1 (MQ=255) cGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGccacca > 1:700812/1‑227 (MQ=255) gtttccaTCTCTTCATCCATCAGAGCTTGGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACa < 2:45936/232‑1 (MQ=255) tctcAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAAAATCCCCACCTGCCGCGATTTCTCCATCAACCGATAAAGCAACGCCAGCCCATCCCTATACAt > 1:481162/1‑238 (MQ=255) cAATCTCTTCATCCATACGAGCTTCGATTTCGAAGGTTTTCATGTGACCGCTGATAAACAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCt < 1:468733/239‑1 (MQ=255) | CTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAT‑GTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCT > NC_000913/1976453‑1976924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |