Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,206,438 G→A 19.1% intergenic (‑182/‑25) ttdR ← / → ttdA transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4380GA19.1% 130.2 / 10.4 68intergenic (‑182/‑25)ttdR/ttdAtranscriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base G (16/37);  new base A (5/8);  total (21/47)
Fisher's exact test for biased strand distribution p-value = 7.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTG  >  NC_000913/3206204‑3206670
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                         
aCGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACa                                                                                                                                                                                                                                        <  2:26708/238‑1 (MQ=255)
    tttCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATAc                                                                                                                                                                                                                                   <  2:665510/239‑1 (MQ=255)
         aCCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGGAGGATTTTTTCC‑AACAAATaacaaa                                                                                                                                                                                                                               >  2:53372/1‑234 (MQ=255)
              tACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCC‑GAAAAATACAAAAAATggg                                                                                                                                                                                                                         >  1:586948/1‑238 (MQ=255)
               aCCTGGAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAg                                                                                                                                                                                                                        <  2:596603/239‑1 (MQ=255)
               aCCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTTCTCTGGCGCAAGATTCATTCTTATTTACGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATACAAAACCACATGT‑TTAGTGGTAGTTTGTGGC‑TGTGAATTTTTCCA‑GACAAATACAAAAACTGGAg                                                                                                                                                                                                                        <  2:137795/239‑1 (MQ=255)
               aCCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAg                                                                                                                                                                                                                        <  1:923934/239‑1 (MQ=255)
               aCCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAg                                                                                                                                                                                                                        <  1:553889/239‑1 (MQ=255)
                    cAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGAGAATTTTTCCC‑GACAAATACAAAAACTGGAgattc                                                                                                                                                                                                                    >  1:756761/1‑234 (MQ=255)
                        tCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAAATTTTTCA‑GACAAATAAAAAAACTTGAGTTGTCctga                                                                                                                                                                                                               >  1:497370/1‑239 (MQ=255)
                          tttGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCatgatg                                                                                                                                                                                                             >  1:312911/1‑239 (MQ=255)
                               cTAAAGGCCAGCTATTCAACATCGTTAATTATCCGCAGTTGTGATAAGCGCTGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCg                                                                                                                                                                                                         <  2:863546/238‑1 (MQ=255)
                                tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa                                                                                                                                                                                                        <  1:457267/238‑1 (MQ=255)
                                tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa                                                                                                                                                                                                        <  2:312911/238‑1 (MQ=255)
                                tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa                                                                                                                                                                                                        <  2:129307/238‑1 (MQ=255)
                                tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa                                                                                                                                                                                                        <  1:1050312/238‑1 (MQ=255)
                                tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACAGTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa                                                                                                                                                                                                        <  1:256212/238‑1 (MQ=255)
                                       cAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaat                                                                                                                                                                                                 <  1:468824/238‑1 (MQ=255)
                                                   aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg                                                                                                                                                                                       <  2:24839/236‑1 (MQ=255)
                                                   aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg                                                                                                                                                                                       <  2:1116517/236‑1 (MQ=255)
                                                   aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACAATT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg                                                                                                                                                                                       <  1:9159/236‑1 (MQ=255)
                                                    tCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTTA‑GACAAATACAAAAAATGGGGTTGCCATGATTAAGGGAAGGAATAAACAAAAGGCAGt                                                                                                                                                                                   >  1:184062/1‑239 (MQ=255)
                                                    tCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGGTAAGTTTTCTC‑GTCAAAAAAAAAAAATGGAGGTGGCATGAGAGGCGGAAATAATAAACaaaacagaag                                                                                                                                                                                   >  2:943734/1‑231 (MQ=255)
                                                       ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTTGATTTTTTCC‑GACAAAAACAAAAAATAGAGGTGCCATTGTTGGCGGAAATAAAAAACAACAAGCacggga                                                                                                                                                                                >  1:1095243/1‑234 (MQ=255)
                                                                             aGCGCAGTGTATTACGCAAAACATTGCCATTCCCTGCTCTGCCGCATTATTCATTCTTATTTTCGTTTTGATTCACGAACTGTTAATTAAATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGGGGC‑GGGGAATTTTTCCA‑GACAAAGACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGAGTGTCGCt                                                                                                                                                         <  2:302195/239‑1 (MQ=255)
                                                                                      tATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑aa                                                                                                                                                                               <  1:331930/208‑1 (MQ=255)
                                                                                         ttCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAAATTTTTCC‑GACAAATACAAAAAATGGAGTTGTCCTGATGAGAGAAAGGAAAAAACAACAAGCAGGG‑AATAAGTTTACAGAGATTGTTGCTAACTTTAACGc                                                                                                                                              >  1:906499/1‑238 (MQ=255)
                                                                                          gccaaaaaatttGCCATTCCATTCTGTGGCGAAAAATTCATTTTTAGTCTGGTGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCCCTATT‑TTAGTGAAAGTTAGTGGG‑GGGAAATTTTCCAA‑TACAAATACAAAATGTGTAGTTGCGTAAATGGGCAAAAGTAATAAGAAACAGGAGGAT‑TCTAAGTTGTGAGGATTTTTCGTTAACTTTACCGCCa                                                                                                                                            <  2:586948/229‑1 (MQ=255)
                                                                                                     tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGGGAAATTTTTCA‑GAAAAAAAAAAAAAAATGAGGTTGCATGATTAGGGAAAGTAATAAACAACACACAGAG‑AAAAAAGTTACAGAGATTTTTTCTTACCTTTCCGCCATGAttttcta                                                                                                                                  >  2:60242/1‑234 (MQ=255)
                                                                                                      gCCATCCCCTGCCCTGGCGCAATATTCATTCTTATTTTCGCTTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGTTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATAAAAAAACGGGAGTTGCAATGATGAGAGAAAGTAATAAGAAACAGGCAGTA‑AATAAGTTGAAAGAGATTGTCGCTAATTTTACCGCCATGATTTCTAccc                                                                                                                                <  1:1142186/239‑1 (MQ=255)
                                                                                                          tcccttGCTCTGGCGCATTATTCAGTCTTATTTTCGCGTTGATTCACGACCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCATATTT‑TTAGTGGTTTGTTTTGGC‑GGTGATTTTTTCAA‑GAAAAATACAAAACTGGGAGTTGCCATGAGGTGCAAAATTAATAAGCAACAGGAAGTG‑AATAAGTGGACAGAGATTTCCGATAACTTTACCGCCATGATTTCTACCCGAAt                                                                                                                            <  2:1106716/234‑1 (MQ=255)
                                                                                                            cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCA‑GACAAATAAAAAAAATGGAGGTGACATTATTGGCGGAAGGAATAAGGAAACAGCAGGG‑AATAAGTTGAGAAAGGTTGTTGCCTACTTTATCGCCCCGAttttttacccaatg                                                                                                                           >  1:1109367/1‑227 (MQ=255)
                                                                                                             ccggCTCTGGCTAAAATTTCATTCTTATTTCCGATTTAATTAACGAAGTTTTAATTAAATATTCACGGTGGAAAAAAATAAAAAACCACATTT‑TTAGTGGTATTTTGTGGT‑GTTAAATTTTTCAA‑GACAAATAAAAAAACGGGAGTTGCCATGATGGGCTAAAGTAATAAGCAACAGCCATTG‑AATAAGTTAACAGGGATTGTCGTTAACTTTACCGCCATGATTTCTACCCGAATGcc                                                                                                                         <  2:497370/236‑1 (MQ=255)
                                                                                                                            tatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGG‑GGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCCATGATGAGAGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                          <  1:943734/239‑1 (MQ=255)
                                                                                                                                cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAAATTTTTCA‑AACAAATACAAAAAAAAGAGGTGCCATGATGAGCGAAAGGAATAAAAAACAGGCAGAG‑AATAAGTTGAAAGAGATTGTCGCTAACTTTACCGCCAATATTTCTAACCCAATGCCTGATGACGCGGGGGGTaaa                                                                                                      >  1:719784/1‑239 (MQ=255)
                                                                                                                                     ttATTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGAAAAAAATAAAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaa                                                                                                 <  1:60242/239‑1 (MQ=255)
                                                                                                                                     ttATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTCCCA‑GACAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaa                                                                                                 <  1:353221/239‑1 (MQ=255)
                                                                                                                                      tATTTTCGCGTTGATTCACGAATTTTTAATTACATATTCACGGTGGCAAAAAATAAAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAAAAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTTTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                <  1:87828/239‑1 (MQ=255)
                                                                                                                                      tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAAATTTTTCA‑GACAAATAAAAAAAATGGAGGTGGCATGATGAGCGGAAGGAATAAGCAAAAAGGAGAG‑AATAAGATGAAAGAGATTTTGGCTAAATTTTACGCCCTGATTTCTTACCCAAAGCCTGAGTAAGGGGGGGGAAAACTaaaa                                                                                                >  1:964194/1‑239 (MQ=255)
                                                                                                                                      tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGAGAATTTTTTCA‑AGCAAAAATAAAAACTGGAGTTGCCGTGATGGGGGAAAGGAATAAACAAAAAGAAGGGAAATAAATGGA‑AGAAATTTTCGCTTAATTTACCCCCCTGATTTTTTCCCGGAAGACTGATTACGTTGGGGGTAAACAaaaa                                                                                                >  1:142788/1‑239 (MQ=255)
                                                                                                                                      aatttcggtcttGCTTCCCAAATTGTAAATTACATTTTCCGGGTGGAAAAAATAAAAAAACCACTTTT‑TTAGGGGTAGTTTGGGGC‑GGTGAATTTTTCCA‑GACAAATAAAAAACCGGGAGTTGCCATGATGAGCGAAATTAATAAGCAACAGGCAGTA‑AATAAGTTGACAGAGATTGTCGCAAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                <  2:780063/229‑1 (MQ=255)
                                                                                                                                                 tGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCAATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                          <  1:57911/218‑1 (MQ=255)
                                                                                                                                                 tGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAAAAAAAAACCACATTT‑TTAGTGTTATTTTGTGGC‑GGTAATTTTTTCCA‑AACAAATACAAAAACTGGAGTTGCCATAATGAGCAAAAGTAATAAGCAACGGGGAGTA‑AATAAGTTAACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGa                                                                                     <  1:193005/239‑1 (MQ=255)
                                                                                                                                                        caaaCTGTGAATTACATATTCACGGCGGAAAAAAAAAAAAAACCACATTT‑TTAGTGGTAGTTGGTGGC‑GGGGAATTTTTCAA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAATTAATAAACAACAGGCAGTA‑AATAGGTCGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGaa                                                                              <  1:859525/237‑1 (MQ=255)
                                                                                                                                                            cttttAATTGCATTTTCCGGGTGGAAAAAAAAAAAAACCCACATTT‑TGTGGGGTAGTGTGGGGG‑GGTGATTTTTTCCA‑GAAAAAAAAAAAAACGTGAGTGGCCATGAGGAGCGAAAGTAATAAGCAAAAGGCAGTG‑AATAAGTTGACAGAGATTGTCGTTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgt                                                                          <  2:906499/236‑1 (MQ=255)
                                                                                                                                                              gTTAATTACATATTCACGGGAAAAAAAAATATAAAACCACATTT‑TTGTGGGTAGTTGTTGGC‑GGTTAATTTTTCAA‑AACAAATACAAAAACTGGAGTTGCCAGGTGGAGCAAAAATAAAAAGCACTAGGCGTTA‑AATAAGTGGAAAGAGATTGTCGTTATCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgtcg                                                                        <  2:964194/239‑1 (MQ=255)
                                                                                                                                                               ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCA‑GAAAAAAAAAAAAAATGGAGGTGCCATGATGAGCGAAAGTAATAAACAACAAGCAGTG‑AATAAAGTTACAGAGATTGTCGCTAACTTTACCGCCATGATTTTTTACCGAATGCATGTTGACGTGGTGGGTAAAATAAAAAAACTAAAAGATGGCGCAAcgtcg                                                                        >  1:925507/1‑238 (MQ=255)
                                                                                                                                                                 aaTGACATGTTCCCGGTGGAAAAAAATAAAAAACCACATTT‑TAGGGTGTAGTTTGGGAC‑GGTGAATTTTCCCA‑AAAAAATAAAAAAACTGGAGTTCCAGTAATGCGCAAAAGTAAAAACAAACGGGCAGTA‑AATAATTGGACAGAGTTTGCCTCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGtcgtcg                                                                     <  2:142788/239‑1 (MQ=255)
                                                                                                                                                                   ttACATATTCGCGGGGGAAAAAAATAAAAAACCACATTT‑GTATTGGTGTTTTGTGGC‑GGTGAATTTTTCCA‑AAAAAAAAAAAAACCGGGAGTTTCAATGAAGAGAAAAAGTAAAAACAAAGGGGCAGTA‑AATAATGGGAAAGAGTTGGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGtcgtcg                                                                     <  2:872854/237‑1 (MQ=255)
                                                                                                                                                                       atatTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCA‑AACAAAAATAAAAAAATGAGTTGTCATTATGGGAGAAAATATAAAAAAACAGGAAGTG‑AAAAAAGTGACAGAGATTGTCGCTAACTTTACACCCCAGATTTTTACCCACACACCTGTTGACATGGGGGGTGAAATCAAAAAGCTAAAAGATGCGGGAAACTCCTAGATgggg                                                               >  2:392203/1‑239 (MQ=255)
                                                                                                                                                                        tatTCAGGGTGGAAAAAAAAATAAACCCATTTTT‑TGAGTGGTGGTTTGGGGC‑GGTCAATTTTGCCA‑AAAAAAAAAAAAAACGGGAGTTACAATGATGGGAGAAAGTAATAAGCAAGAGGCACTG‑AAAGCGTGGAAAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                              <  1:827442/239‑1 (MQ=255)
                                                                                                                                                                        tatTCACGGTGGCAAAAAATATAAACCCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGATTTTTACCA‑GACAAAAACAAAAACTGGAGTTGCCATGATGAGAGAAAGTAATAAGCAACAGGCAGTA‑AATAAGTTGAAAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                              <  1:662820/239‑1 (MQ=255)
                                                                                                                                                                        tatTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                              <  1:903447/239‑1 (MQ=255)
                                                                                                                                                                         atTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGGGAATTTTTCCACAACAAAAAAAAAAAATGG‑GTTTGCATGATGAGGAGAAAAAATAAAAAACAGGCAGTG‑AATAAGATGATAGAGAATGTCGCTAACTTTAACGCCATGATTTCTACCCCAATGGCTGGTGACGGGGGGGGTAAACTCAAAAAAATAAAGGGAGCCGAAAAGGAGTCGGTgggggg                                                             >  2:183559/1‑237 (MQ=255)
                                                                                                                                                                          gacACGGTGGCAAAAAAAAAAAAACAAAATTT‑TTATGGGTAGTGTGTGGG‑GGTGAATTTTTCAA‑GCAAAATAAAAAATCTGGAGTTGCAATGAGGAGAGAAAGTAAAAAGCAACAGGCAGTG‑AATAAGTTGACAGAGTTTGTCGTTAATTTTTCCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                              <  2:719784/235‑1 (MQ=255)
                                                                                                                                                                            cACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGAAACAGGCAAGG‑AATAAGATTACAGAGAATTTCGCTTACTTTACCGCCATGATTTTTACCCGAAAGCCCGATGAGGTGGGGGATAAACTAAAAAAACTAAAAGAAGCCCGAAAGTCGTCGATGGGGGAAAt                                                          >  1:871285/1‑239 (MQ=255)
                                                                                                                                                                                tggaaaaaaaaTAAAAAAAC‑CATTTGTTGTTGGTGGTGTGTGGG‑GGTAAATTTTTCGA‑AACAAAAACAAAAACTGGAGTTACTATGATGGGCGAAATAAATAAGCAACAGGAAGTT‑AATAAGTTCATACAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACTTCGTCGATGGGGAAAATTAt                                                       <  2:174226/233‑1 (MQ=255)
                                                                                                                                                                                 tGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCC‑GAAAAAAAAAAAAAATTGAGTTGCCCTGATGAGCGGAAGGAATAAACAAAAGGCCGTG‑AATAAGTTGACAGAGATTTTCGCTAACTTTACCGCCATGATTTTTTCCCGCAAGCCTGATGAAGGGGGGGGTAAACTAAAAAAGCTAAAGGATGCCGGAAAGTCGTCGCTGGGGGAAATTATCt                                                     >  1:832264/1‑239 (MQ=255)
                                                                                                                                                                                   gaaaaaaaaaaaaaCCCACATTT‑TTAGTGGTAGTTTGGGGC‑GGTGAATTTTTCAA‑GAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGGA‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTa                                                    <  1:1111938/236‑1 (MQ=255)
                                                                                                                                                                                   gCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCA‑GACAAAAAAAAAAAATGGAGTTGCCATGATGAGCGGAAGTAATAAACAACAGGCAGTG‑AATAAAATTACAGAGATTGTAGCTAACTTTAACGCCATGATTTCTTCCCGCATGCCTGATGACGGGGTGGGTAAAATAAAAAAGCTAAAAGAAGGCGAAACGTCGTCGGTGGGGGAAATtatata                                                    >  1:1148268/1‑238 (MQ=255)
                                                                                                                                                                                           tataAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATggg                                                                <  1:691234/218‑1 (MQ=255)
                                                                                                                                                                                             taAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCA‑GACAAATACAAAAAATGGAGTTGCCATGATGAGCGAAAGTAATAAACAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCCAAAGCCTGATGACGGGGGGGGTAAAATAAAAAAGCTAAAGGATGCCGAAACGTCGTCGATGGGGGAAAATATTTACCATACCATGt                                         >  1:258223/1‑239 (MQ=255)
                                                                                                                                                                                                      aTTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAg                                                                                                                                                                                                                        <  1:148343/56‑1 (MQ=255)
                                                                                                                                                                                                                   aGTTTGTGGG‑GGAGAATTTTTCCA‑AAAAAATAAAAAAACTGGAGTTGCAATGAGGAACGAAAGAAATAAGCAACAGGCGGTA‑AAGAAGTGGACAGATATTGTCGTAAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                    <  2:493407/239‑1 (MQ=255)
                                                                                                                                                                                                                   aGTTGGTGGA‑GGTAAATTTGACAA‑CAAAAATACAAAAACTGAAGTTGCCATGATGAGCGAAAGGAATAACAAACAGCCAAGA‑AATAAGTTGACTGAGATTGTCGCTACCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                    <  2:533339/239‑1 (MQ=255)
                                                                                                                                                                                                                     tttGTGGC‑GGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGAAATAAGCAACAGGCAGTA‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                               <  1:113038/210‑1 (MQ=255)
                                                                                                                                                                                                                                      tttCCA‑GACAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGTAAAAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg  <  1:796851/239‑1 (MQ=255)
                                                                                                                                                                                                                                      gtgccA‑AACAAAGAAAAAAACTGGAGTTGCCATAATGAGCGAAAGAAAAAAACAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGTAAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg  <  2:363770/236‑1 (MQ=255)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                         
ACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTG  >  NC_000913/3206204‑3206670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑