| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,065,596 | C→A | 16.9% | L57L (CTG→CTT) | yihO ← | putative sulphoquinovose importer |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,065,596 | 0 | C | A | 16.9% | 223.3 / 4.6 | 80 | L57L (CTG→CTT) | yihO | putative sulphoquinovose importer |
| Reads supporting (aligned to +/- strand): ref base C (49/15); new base A (2/12); total (52/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.27e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGG > NC_000913/4065360‑4065827 | gagccattCAACAGACTGTATGAAAGTCCAAAAATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑GGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGGCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAG‑CTTCGCCACCAg < 2:760346/233‑1 (MQ=255) cAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGaaa > 1:775027/1‑239 (MQ=255) gTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGa > 1:760346/1‑239 (MQ=255) gTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGa > 1:43848/1‑239 (MQ=255) gTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGGGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGa > 1:401747/1‑239 (MQ=255) ttCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACAAGAAAGAt > 2:801786/1‑239 (MQ=255) tGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTCACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCa > 1:1080449/1‑239 (MQ=255) tGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCa > 1:977708/1‑239 (MQ=255) tATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATa > 1:1093797/1‑239 (MQ=255) aTGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGATTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGA‑TGCACTTAACGCATCCGGAACCG‑ATGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGATTCGGGTAAACATCCGGGGAGCATACAAGTAAA‑CGGGGTAAAAAA‑CTTCGCCACACGGCAGATACT‑CCAGCCATat > 2:991400/1‑238 (MQ=255) tCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAg > 1:927136/1‑239 (MQ=255) tCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAg > 1:696966/1‑239 (MQ=255) caaaacacaaaaaaCAGCGGGGGGGCAATCGCCTTTTTACCCGGCAAACAAAAGGTGGT‑GGCAATAAACTGGGGCGT‑TGCAATAAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTGGCTTTTAGGCCCAATATTTTGCCGCGAGTCGAGAAAAAATCCGGTGAGCATATCGGTAAA‑CGCGTAAAAAAA‑CTCCGCCACCAAAAAGATAAT‑CCCGCCATAGTAAGCAgg < 1:986801/228‑1 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGc > 1:38652/1‑239 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGc > 1:9412/1‑239 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGACAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGc > 1:1111648/1‑239 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGG‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGc > 1:930904/1‑239 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCTTAATTCATCg > 2:159886/1‑239 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAAt > 1:850839/1‑233 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCg > 2:497785/1‑239 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCg > 1:711492/1‑239 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCAACCATAATTCATCg > 2:1090914/1‑239 (MQ=255) cgcgGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCgg > 1:979904/1‑239 (MQ=255) cacgtgggCAATCGTCGTTTTAACCGGCAAACAAAATGTGGT‑GGCGATAAACAGGAGCGT‑TGCAATTAACTCCGCCGGAACCG‑CCGCAAATAAAATAAAGGCACCAAATTTGCCTTTAGGCCCAATATTTTTCCTCGAGACGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCCCCAGAAAGACAAT‑CCCGCCATAGCAAGTAGGAATCCCAAATTCCTccg > 2:1112559/7‑237 (MQ=255) gcgGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGt > 1:55517/1‑239 (MQ=255) gTGGCAATCGTCGTTTTACCCGGAAAACAAAAGGTGGT‑GGGAAAAAACTGGAGCGT‑TGCAATTACCGCCGCCGGACCCG‑CTGAATAAAAAATAAAGGGAGGAAATTTGCCTTTAGCCCCAATATTTTTCCGCGAGTCGAGTAAAAACCCGGTGAGCTTATCGTTAAC‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGtat < 1:23859/238‑1 (MQ=255) tggtcttTTAACCCGACAAAAAAAGGGGGGG‑GGCAAAAATGTGGGGTGT‑TAAAATCACCGCGGCCGAAACCG‑CTGCATAAAAAAAAAAGGGACAAAATTGCCCTTTAGCCCAAATTTTTTCCCGCTAGTAGAATAAAAACCGGGTGAGCATATCGGTAAA‑CGCGGAAAAAAA‑CTTCGCCACAAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTg < 2:1111648/237‑1 (MQ=255) tcgtctTTTAAACCGACAAACAAAAGGTGGG‑GGGGATAAACTGGAGCTT‑TGCAATTACCGCCGCCGGACCCG‑CTGCATATAAAAAAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGGGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAC‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTg < 1:809854/239‑1 (MQ=255) ctgtcgtTTTAACCGGAAAAAAAAGGGGGGG‑GGCAAAAAACGGGAGCGT‑TGAAATTAACGCCGCCGGAACCG‑CTGCATAAAAAAAAAAGGGACAAAATTTGCCTTTAGGCCAAATATTTTCCCGCGAGTCGAGAAAAAACCCGGTGAGCATATCGGTAAA‑CGGGGAAAAAAA‑CTCCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTg < 1:801786/237‑1 (MQ=255) tcttttaAACAGGAAAACAAGAGGGGGG‑GGGAATAAACT‑GAGGGTGTAAAATTAACGGCGGAGAAAGCG‑CGTAATAAAAATAAAAGGGAAGAAATTTGCCTTTAGGCTCATTTTTTTGCGGAGAGTAGAAAAAAAATCCAGTGAGTATGAGGGAAAA‑GGGGGAAAAAAA‑GTCCCCGACCAGAAAAATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgagg < 2:50053/236‑1 (MQ=255) ttttAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAAACG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGgaga > 2:661410/1‑239 (MQ=255) ttttACCGGAAAAAAAAAGGTGGTGGGCGAAAAACAGGAGATT‑TACAATTAACGCCCGCGGCACCG‑CTGCATAAAAAAAAAAGAGACAAACTTTGCTTTCGGGCCAAATATTTGGCCGGGTGTCGAAAAAAAACCGGGTGGGAGTTTCGGTAAC‑CGGGAAAAAAAC‑CTTCCCCACCAGAAAAAAAAC‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgaggag < 2:489354/238‑1 (MQ=255) ggaaaacaaaAGGTGGA‑GGCGTTAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGACATTTGCCTTGAGGCCCAATCTTTTTCCGCGAGTTGAGTAAAAATCCGGTGTGCATACCGGTAAA‑CGCGGTAAAAAG‑CTTCGCGACCAGAAAGATAAT‑CACGCCATACTAAGAAGGCATCCCTAATTCACCGGTTTAAAATTGGAGGAGTTACacggt > 2:410690/4‑235 (MQ=255) aaagGGTGGT‑GGCAAAAAACTGGAGCGT‑TGAAATTAACGCCGCCGGAACCG‑CTGCATAAAAAAAAAAGGGACAAAATTTGCCTTTAGCCCAAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGAAAAAAC‑CTTCCCCCCAAGAAAGATAAT‑CCCGCCATAGTAAGCAGGc < 1:76774/191‑1 (MQ=255) ggCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAAtt > 2:76774/1‑191 (MQ=255) ggCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTa > 1:597527/1‑239 (MQ=255) tAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACGAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTc > 2:597310/1‑239 (MQ=255) aaaTTGGAGCGT‑TTCAATTAACGCCGCCGGAACCG‑CTGCATATAAAAAAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCCGTGAGCATATCGGCAAA‑CACGGTAAACAC‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTACGAAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATCCAGCGTACCGCTGCAGAGCATTAAATTCg > 2:129769/1‑239 (MQ=255) aaaCTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATccc > 1:569591/1‑180 (MQ=255) tggCAAATAACCCCCGCCGAACCGCCTGAATATAAAAAAAAGGGAGAAATTTTGCTTTGAGGCCAAATTTTTCCCCGCGAGTCGAAAAAAAACCCGG‑GAGACTATGCGTAAACCGGGGAAAAAAT‑CTTCGCCACAGAAAAAAAAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTc < 2:9412/237‑1 (MQ=255) tGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCg > 1:191761/1‑238 (MQ=255) cAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGccc > 1:257881/1‑239 (MQ=255) tGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTccc > 2:445275/1‑239 (MQ=255) aaaagaaaataaaTGGATCAAAGTTGCGTTGAACCCAATTTTTTTTCCCGGCGTCGAGAAAAAACCGGTTGACCATAGAGG‑AAA‑CCGGGTAAAAAAGCCCCGCCATCAAAATGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATGAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCg < 2:55517/233‑1 (MQ=255) ataaaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAg > 1:173005/1‑239 (MQ=255) aGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGtttt > 1:481109/1‑239 (MQ=255) aGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACAATAGGCGATTTTTTCCCGCAGATTCAGtttt > 1:473556/1‑239 (MQ=255) aCGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATg > 1:665086/1‑239 (MQ=255) cGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATg > 2:319613/1‑238 (MQ=255) cGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATg > 2:382121/1‑238 (MQ=255) cGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATg > 1:572437/1‑238 (MQ=255) cGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATg > 2:529992/1‑238 (MQ=255) cGAAATTTGCCTTTAGGCACAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATCTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCAGCAGCTTACGtttt > 2:185530/1‑234 (MQ=255) cGAAATTGGCCTTTAGGCCCAATATTTTTCCGAGAGTCGAAAAAAAACCCGGGGAGAATATCGGTAAA‑CGCGGTAAAAAC‑CTCCGCCACAAGAAAAATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATg < 1:716533/238‑1 (MQ=255) gAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTc > 1:996034/1‑239 (MQ=255) tgttGCCGATAGCCCCAATTTTTTCCCGCACGACGAAAAAAAACCCGGTAAGCATACCGTAAAA‑CGCGGTAAAAAA‑CTTCGCCCCAAAAAAAATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGt < 2:191761/237‑1 (MQ=255) cttttAGCCCAAATATTTTCCGGCGAGTAGAGAAAAAATCCGGGGAGCATATGGGAAAA‑CGCGATAAAAAC‑CGCCGCCACAAAAAAGAAAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGAt < 1:497785/236‑1 (MQ=255) tAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGa > 1:762784/1‑233 (MQ=255) tAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATgg > 1:723248/1‑239 (MQ=255) agcccaaaTTTTTTTCCGAAAGTCAAGAAAAAGGCCGGTGAGCATAGAGAAAAG‑CGCGGTAAAAAA‑CTCCGCCAACAAAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGt < 2:51195/233‑1 (MQ=255) aGGCCTTATTTTTTTCCGTGAGTCGAATAAAACTCCGGTGAGCATATCGTTAAA‑CGCAATAAAAAC‑TTCCCCCACCAAAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGt < 1:777768/239‑1 (MQ=255) tttttcCCGCGAGTCAAAAAAAAATCCGGAGAGCATAGCGGAAAA‑CGCGGAAAAAAC‑CTTCGCCCCAAAAAAAAAAAC‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATaa < 2:257881/238‑1 (MQ=255) tCCGCGAGTCGAGTAAAAATCCGGTGAGCATAGCGGTAAA‑CGCGGAAAAAAC‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACt < 1:592006/239‑1 (MQ=255) gccgagaggggagaAAAAATCCGGTAAAGACATGCGTAAA‑CGCGTAAAAAAA‑CTCCGCCCCAAGAAAAAAAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACt < 2:723248/229‑1 (MQ=255) cgcgAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACt > 2:827870/1‑237 (MQ=255) gtAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGc > 1:1046978/1‑238 (MQ=255) cGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAAAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCTTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAggg < 1:159886/238‑1 (MQ=255) ggTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACGAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGcg < 1:597310/239‑1 (MQ=255) aatacgggTAAA‑GGCAGAAAAAAT‑CTACGCTGAAAGAATGAAAAT‑CCCGCCATAGTAAGCAGGCAGCCCTAATTCAGCTGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGtt < 1:410690/232‑1 (MQ=255) tctCGGTAAA‑CGAGATAAAAAA‑CTCCACCACAAGAAAAAAAGA‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttat < 2:173005/237‑1 (MQ=255) tatCGGTAAA‑CGGGGTAAAAAA‑CTTCGCCACCAAAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttat < 1:529992/239‑1 (MQ=255) tatCGGTAAA‑CGCGGTAAAAAC‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttat < 1:661410/239‑1 (MQ=255) aaccgtaaaa‑CGGGGAAAAAAA‑CTTCGCCAAAAGAAAGAAACT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttat < 2:43848/232‑1 (MQ=255) tAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCa > 1:990150/1‑220 (MQ=255) cgcgGTAAAAAC‑TTTCCCCATAAAAAAG‑TAATCCCCGCCATAGTAAGCAGGCATACCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACg < 1:989444/239‑1 (MQ=255) ggTAAAAAA‑CTCCGCCACCAAAAAGATAAC‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCg < 1:1090914/239‑1 (MQ=255) gTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGt > 1:394947/1‑239 (MQ=255) tAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGt > 1:480595/1‑238 (MQ=255) ttCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAAt > 1:802826/1‑182 (MQ=255) cGCCTCCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCCTAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATTGTCATACATAATCACTCCTTCTACCGCCCCGCAGGGCGTCGTTTTTTATTATTACGCCGTGCGTTTACgg > 2:631453/1‑238 (MQ=255) | GAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGT‑GGCGATAAACTGGAGCGT‑TGCAATTAACGCCGCCGGAACCG‑CTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAA‑CGCGGTAAAAAA‑CTTCGCCACCAGAAAGATAAT‑CCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGG > NC_000913/4065360‑4065827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |