Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,611,919 | C→A | 16.7% | intergenic (‑65/+47) | yneF ← / ← yneG | putative membrane‑bound diguanylate cyclase/DUF4186 family protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,611,919 | 0 | C | A | 16.7% | 232.7 / 4.1 | 82 | intergenic (‑65/+47) | yneF/yneG | putative membrane‑bound diguanylate cyclase/DUF4186 family protein |
Reads supporting (aligned to +/- strand): ref base C (32/35); new base A (2/13); total (34/48) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.93e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTCCCCGCTCCGCCAATGACTACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCATGGGGGTTTGCTTACCGT > NC_000913/1611682‑1612153 | cTCCCCGCTCCGCCAATGACTACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCa < 2:312189/239‑1 (MQ=255) ccccGCTCCGCCAATGACTACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCaaa < 1:1120459/239‑1 (MQ=255) tCCGCCAATGACTACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAgg < 1:1051191/239‑1 (MQ=255) ccGCCAATGACTACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGt > 2:488948/1‑239 (MQ=255) ccAATGACTACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTAc > 1:505373/1‑238 (MQ=255) tACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTAACCTGGGAAt > 1:1157388/1‑239 (MQ=255) tACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTAACCTGGGAAt > 1:225864/1‑239 (MQ=255) gCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑ttt > 1:1120598/1‑239 (MQ=255) acaATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCg < 2:942782/239‑1 (MQ=255) aaTAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCa < 1:1024978/239‑1 (MQ=255) aaTAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCa < 1:1250702/239‑1 (MQ=255) gcgATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATtct < 2:832308/237‑1 (MQ=255) aTGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATg > 1:522235/1‑238 (MQ=255) aTGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATg > 2:339651/1‑238 (MQ=255) gggCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGa < 1:920036/238‑1 (MQ=255) gggCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGa < 1:756712/238‑1 (MQ=255) gggCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGa < 2:1088687/238‑1 (MQ=255) catcTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCa > 1:353096/1‑236 (MQ=255) gTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACa < 2:627322/239‑1 (MQ=255) ttCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACAAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGAACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACa > 1:361669/1‑238 (MQ=255) tCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAc < 1:382561/239‑1 (MQ=255) tCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAc < 1:488948/239‑1 (MQ=255) tCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAc < 2:1011219/239‑1 (MQ=255) tCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATGCTCATGGCTGATTCATCTGTACAAc < 1:563813/239‑1 (MQ=255) gCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAccag < 2:292347/239‑1 (MQ=255) cTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAccag > 1:893053/1‑238 (MQ=255) cTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTCGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAccag > 2:1248654/1‑238 (MQ=255) tttAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAccagc < 1:519951/238‑1 (MQ=255) gcgGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAg < 2:896651/239‑1 (MQ=255) cgGCAACACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGa > 1:2034/1‑239 (MQ=255) aCTCCAGAAATAGCAACCTGCACCAGACAAGGCCCGATCAACACGCCCGTTGAAAATTGCTCACTGAACCAGTCCGCAAGAAAAGGCCAGAAACCCAGACAATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGGGGCGGAAAAAAAAGGTACCCTGGAAATGCTA‑TTTGGTCGTTTCCCGAAATTCTAATGGCTGATTCATCTGTACACCCAGCCATTGATAGATTACCGc < 2:354448/239‑1 (MQ=255) tCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATAAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTCCCCTGGAAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTAAAACCAGCCAGTGATAGATTACCGCCa < 1:880670/239‑1 (MQ=255) cccAGAAATAGCAAAGGTCAGCATACAAGGCACGATCAACACGCCCGTGGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTCCCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGTTGATTCATCTGTACACCCAGCCAGTGATAGATTACCGCCa < 2:493151/238‑1 (MQ=255) ccaaGGAATAGCCAACGTCAGCAAACAAGCCACGACCAACACGCCCGTGGAGAATTGCTCACTAACCCAGCCCGAAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGAAAATAAAGGTACCCGGGGAATGCTA‑TTTTGTCGTTTTCCGAAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCa < 2:736508/236‑1 (MQ=255) cAGGAATAGCCAACGACAGCATACAAGGCCCGATCAACACGCCCGTTGAGAATTGCTCACTGACCCAGTCCGCAAGAAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACg < 1:566159/239‑1 (MQ=255) tAGCCACCGTCAGCATACAAGGCACAATCAACCCGCCCGTTGAGAATTGCTCACGAAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATaa < 1:718979/239‑1 (MQ=255) tAGCCAACGCCAGCAAAAAAGGCACGATCAACACGCCCTTTGAAAATTGCTCACTGAACCAGTCCGCAAGAAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGAAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATaa < 2:1120598/239‑1 (MQ=255) aGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAAc > 2:221013/1‑239 (MQ=255) gacAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCAGTGAACCAGTCCGCAAGCAAAGGCCAGAAATCAAGACTATCAATACTGACCGAATCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAACGGTAACCTGGGAACGCTA‑TTTTGTCGTTTTCCGCAATCCCCTAGACAGATTCATCTGTACAGCCAGCCAGTGAAAGATTACCGCCACGATATAACg > 2:281734/3‑239 (MQ=255) gCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAGGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACg > 1:976750/1‑239 (MQ=255) gCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATACCg > 2:1051881/1‑239 (MQ=255) gCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACg > 1:395588/1‑239 (MQ=255) gCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACg > 1:947413/1‑239 (MQ=255) aaCGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACgttg < 1:279611/239‑1 (MQ=255) cATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGAAAGCAAAGGCCAGAAATCCAGCCTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGttctt < 1:66415/239‑1 (MQ=255) caagacaagaTCAACCCGCCCTTTGAGAATTGTCCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAATCAAGATAGCATGTTGGCTAACGGCGGCGGAAAAAAAAGGTCCCCTGGGAATGCTA‑TTTTTTCGTTTTCCGAAATTCTCAGGGCTGATTCATCTGTACACCCAGCAAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCt < 1:281734/239‑1 (MQ=255) cAAGGCACAACCAACACGCCCGTGGAGAATGGCTCACTGAACCAGCCCGCAAGCAAAGGCAAGAAACCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGAAAATAAAGGTACCTTGGGAAGCCTA‑TTTTGTCGTTTCCCGCAATTCTCATGGCTGATTCATCTGTACACCCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCt < 1:70498/239‑1 (MQ=255) aGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTa > 1:687477/1‑239 (MQ=255) aGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGAAAGCAAAGGCCAAAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTa < 1:221013/239‑1 (MQ=255) gaacAACACCCCTGTTAAGATTTGCTCACTGAACCATTCAGAAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCAACCAAAGATACCATTTTCCCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATTCTA‑TTTTGTCGTTTTCCGCAATGCTCATGGCTGATTCATCTGTACAACCAGCCAGTAATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGaaa < 2:1157388/236‑1 (MQ=255) gATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGaa > 1:639553/1‑238 (MQ=255) aTCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAac > 2:892982/1‑239 (MQ=255) caccacGCCGGTTGAGAATGCCCCACCGACCCAGTCCGAAAGCAAAGGCCAGAAAACCAGACTACCAATACTGACCCAACCAAGATAGCATGTTCGCTGCCAGCGGCGGAAAATAAAGGTCCCTGGGGAATGTTT‑TTGTGTCGTTTTCCGCAATCCGCATGGCTTATTCTTCTGTACAACCAGCCAGTGATAGATGACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAacac < 2:361669/236‑1 (MQ=255) aaCACGCCCGTTGAAAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACAcc < 1:1063773/239‑1 (MQ=255) cacGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGAATGTTCGCTGAAAGCGGCGGAAAACAAAGGTACCCTGGGAATGATA‑TTTTGACGTTTTCCGCAATACTCATGGCTGATTCATCTGTACAACAAGCCAGTGATAGATTACAGCACCGATATAACGATGTAGTTCTTCGCTTAACGCAacaa > 1:671690/1‑235 (MQ=255) gcccttgaagaATTGCTCACTAACCCGGTCCGCAAACAAAGCCCAAAAATCCAGCCTACCAATACGGACCGAACCAAGATAGAATGTGCGCTGACAGCGCGGGCAAATAAAGGTACCCTGGAAATGCTA‑TTTTGACGTTTTCCGCAATTCCCATGGCTGATTCATCTGTACAACCAGCCAGTAATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCg < 2:105692/231‑1 (MQ=255) ccccTTTGAGAATTGCTCACTAAACCAGCCCGAAAGAAAAGGCAAAAAATCAAGCCTATAAATACTGACCAAACCAAGATAGCATGTCCGGTAACAGCGGCGGAAAATAAAGGTCCCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACACCCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCg < 2:177706/238‑1 (MQ=255) cccttcgaaaaTTGCTCACTGAACCAGTCCGCAAGCAAAGGCAAGAAAGCCAGACTAACAATACTGACCGAACCAAGATAGCATGTTCGCTGCAAGCGGCGGCAAATAAAGGTCCCTTGGGAATGCTA‑TTTTGTCGTTTGCCGCAATTCTCATGGCTGATTCATCTGTACAACCGGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCgg < 2:715278/230‑1 (MQ=255) ttGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGAACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATACATTACCGCCACGTTATACCGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGCAATg > 2:227492/1‑239 (MQ=255) aaaTTGCTCACTGAACCAGTCCGAAACCAAAGGCCAGAAACCAAGTCTATAAATACTGACCAAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAAAAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATCCTCATGGCTGATTCATCTGAACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTAt < 2:522235/238‑1 (MQ=255) tGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCGGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCa < 1:339651/239‑1 (MQ=255) tCACTGAACCAGTCCGCAAGCAAGGCCCAGAAATCAAGTCTATAAATCCTGACCGAACCAAGAATCCATGTTCGTTGACAGCGGGGTCAAATAAAGGTACCCTGGGAATCTTT‑TTTCGTCGTTTTCCACAATCCTCGTGCCAAATTCCTCTGTACACCCAGCAAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACtt < 2:137931/239‑1 (MQ=255) cctgcccGAAAACAAAGGCCAGAAATCAAGATTACAAATACCGCCCGAACCAAGATAGCATTTTCGCTGACAGCGGAGAAAAATAAGGGTCCCCTGGAAATGCTT‑TTTTGTCGTTTTCCGAATTTCTCATGGCTGATTCATCTGTACAGCCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGAc < 2:960967/234‑1 (MQ=255) cAGTCGCCAAGCAAAGACAAAAATACCGGCTTATCAATCCTGACCGAACAAAGCTACCATGTCCGATGCCGGCGGCGCAAAATAAAGTTCCCCGGGGAATGTTT‑TTTTGTCTTTTCCCGCATTTCTCATGTTTTTTTCTTCTGTACAACCACCCAGTGATATATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACa < 2:1077866/239‑1 (MQ=255) caagcaaAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGAAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCGATTATCATGGCTGATTCATCTGTACAACCAGCCAGCGATACCTTACCGCCACGATATACCGTTGTTGTTGTTCGCTTAACGAAACACCGTGCGGACTGTTATGCCACTTAGCCAGaacaccccg > 2:509436/1‑230 (MQ=255) gACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAccagc > 2:487428/1‑125 (MQ=255) gACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAAccagc < 1:487428/125‑1 (MQ=255) tATCAATACTGACCGAACCAAGATAGCATGTTCGCGACCAGCGGCGGAAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTGCCGCAATTCTCATGGCTGATTCACCTGTAAACCCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTGCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGa < 1:509436/239‑1 (MQ=255) ataaaTACTGACGGACCCAAGAAAGTGTGTTCGTTGACAGCGGGGGCAAATAAAGTTTCCTGGGAAATGTTT‑TTTTGTCGTTTCCCGCAATCCTCATGGTTGATTCATCTTTCCATCCACCCGGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTGCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGGCAGCAGGTCGCGGTGGCGTGCTGAg < 2:893053/236‑1 (MQ=255) cTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATaa > 1:695911/1‑238 (MQ=255) gACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAac > 1:704133/1‑238 (MQ=255) gACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAac > 1:35160/1‑238 (MQ=255) gACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGAGCTGAGCGATAAac > 2:865474/1‑238 (MQ=255) ccGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCa < 2:59551/37‑1 (MQ=255) ccGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCa > 1:59551/1‑37 (MQ=255) aaCCAAGATAGCATGTTCCCGGACGGCGGCGGAAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTCCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGa < 2:687477/239‑1 (MQ=255) gATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGccc > 1:56854/1‑238 (MQ=255) cATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCAt > 1:1134214/1‑239 (MQ=255) aTGTTCGCTGACAGGGGCGGAAAAAAAAGGTCCCCTGAGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCAGGTAAAAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCa < 2:138941/237‑1 (MQ=255) ttCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCATgggg > 1:826586/1‑239 (MQ=255) acttccggcggcgCAAAAAAAAGGTACCCGGTGATTCCTT‑TTTTGTCTTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAAATTCCCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACGCCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCATGGGGGtt < 2:2034/232‑1 (MQ=255) cggcggCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGCTAAACACCGGATGCCCGCGCATGGGGGTTTGCTTAcc > 1:404812/1‑239 (MQ=255) gcggcAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCATGGGGGTTTGCTTACCg > 1:166004/1‑238 (MQ=255) cggcAAATAAA‑GTTCCCCGGGGATGGTATTTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAAATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCATGGGGGTTTGCTTACCGt < 1:5840/238‑1 (MQ=255) | CTCCCCGCTCCGCCAATGACTACCGAGGCAATAACCGACACAATAAGCGCGATGGCGGGCATCATCTGTTCTGCTTTAAAGCGCGGCAGCACTCCAGGAATAGCCAACGTCAGCATACAAGGCACGATCAACACGCCCGTTGAGAATTGCTCACTGAACCAGTCCGCAAGCAAAGGCCAGAAATCCAGACTATCAATACTGACCGAACCAAGATAGCATGTTCGCTGACAGCGGCGGCAAATAAAGGTACCCTGGGAATGCTA‑TTTTGTCGTTTTCCGCAATTCTCATGGCTGATTCATCTGTACAACCAGCCAGTGATAGATTACCGCCACGATATAACGTTGTTGTTCTTCGCTTAACGAAACACCCTGCGGAATGTTATGCCACTTAGCCAGACAACCGCGACAGCAGGTCGCGGTGGCGTGCTGAGCGATAAACACCGGATGCCCGCGCATGGGGGTTTGCTTACCGT > NC_000913/1611682‑1612153 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |