mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4522458 = | 137 (1.070) | 3 (0.020) | 3/408 | NT | 2.2% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | 4522501 = | 132 (1.080) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | 3736656 = | 187 (1.460) | 3 (0.020) | 3/408 | NT | 1.6% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 183 (1.500) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 3577772 | 172 (1.340) | 4 (0.030) | 4/428 | NT | 2.3% | coding (955/996 nt) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| ? | NC_000913 | 3652036 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3424750 | 148 (1.180) | 5 (0.040) +TCTTCTTC |
5/392 | NT | 4.1% | noncoding (2034/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4039547 | 94 (0.750) | noncoding (2029/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3263132 = | 136 (1.060) | 3 (0.020) | 3/406 | NT | 2.4% | coding (529/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | NC_000913 | 3263186 = | 113 (0.930) | coding (475/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_000913 | 3220237 = | 99 (0.770) | 4 (0.030) | 4/408 | NT | 3.3% | coding (744/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | 3220409 = | 138 (1.130) | coding (916/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | 2791462 = | 117 (0.910) | 3 (0.020) | 3/414 | NT | 2.8% | coding (190/1449 nt) | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| ? | NC_000913 | 2791493 = | 99 (0.800) | coding (221/1449 nt) | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent | |||||
| * | ? | NC_000913 | = 2713829 | 140 (1.090) | 4 (0.030) | 4/406 | NT | 2.8% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 142 (1.170) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2643100 | 128 (1.000) | 5 (0.040) | 5/400 | NT | 3.8% | intergenic (‑256/+29) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 2643110 | 136 (1.130) | intergenic (‑266/+19) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 1729156 = | 113 (0.880) | 3 (0.020) | 3/410 | NT | 2.6% | coding (70/4617 nt) | lhr | putative ATP‑dependent helicase |
| ? | NC_000913 | 1729218 = | 116 (0.940) | coding (132/4617 nt) | lhr | putative ATP‑dependent helicase | |||||