Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,151,329 | T→G | 23.8% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,151,329 | 0 | T | G | 23.8% | 101.1 / 2.7 | 67 | A590A (GCA→GCC) | ppc | phosphoenolpyruvate carboxylase |
Reads supporting (aligned to +/- strand): ref base T (34/12); new base G (11/7); total (46/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.68e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTT > NC_000913/4151094‑4151565 | ggTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCACTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCCTGAGGAGGtct > 1:126694/1‑236 (MQ=255) gACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTG‑GACCACAGCGCCCCCTGCGCAGGGGggccg > 2:1303247/1‑238 (MQ=255) aCATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGCGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCTCCTTTCAGGCTTCCTGGCGGTTTT‑GAAAGGACCGCCGCATGAGCAGGGGggccgc > 1:1340019/1‑238 (MQ=255) cATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGcgccgccg < 1:946423/239‑1 (MQ=255) cATCGCAGGAGATGACTGACAGTTCATCAATAATGCGAGGCCAGCTCTCTGTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTGAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCGTTCAGGCTGCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGcgccgcc < 2:58767/238‑1 (MQ=255) tCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATCTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCcgcg < 1:371563/239‑1 (MQ=255) cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGGGCGCCGCcgcg > 1:101826/1‑238 (MQ=255) cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAG‑‑CTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCACGAGCCGGGGCGCCGCcgcgga > 1:1054388/1‑236 (MQ=255) gagaTGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATAATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCACCCCCGCCTGAGCCGTGGCGCCGCCGGGACCAAt > 1:202000/1‑239 (MQ=255) acAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTG‑TACAGCAACGCCGCCTGAGCAGGTGCGCCGCAGCCGACAAAGGAAccgcc > 2:1228706/1‑238 (MQ=255) ttCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAAGCCGCCTTTCAGGCTTCCTGGCGGCTGC‑TACAACACCGCCGCACGAGAAGATGCGTCCCCCCCACCACTAGAACcgccgccg > 2:786143/1‑236 (MQ=255) cATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTT‑GACAGCAGCGCCGCATGAGCCAGGGCGCCGCCGCGACCAATGGAACCGCCGCGcccc > 1:1237757/1‑238 (MQ=255) tAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGACTTTCAGGCTTCCTGGCGGGTGT‑GACAGCCGGGGCGGATGAGCCGGTGGGCCGCCGCCGACAAAGGAACCGCCGCGAGCGGGGaaa > 2:113904/1‑238 (MQ=255) tGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGaacaac > 1:1171719/1‑239 (MQ=255) aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCACCGCCGCATGCGCAGGTGCGCCGCCGCGACCACTGGACACGCCGCGGCCGCGGCAACACGTCa > 2:29693/1‑239 (MQ=255) tttCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGGATGAGCAGGTGCGCCGCCGCGACCAATGGAAACGCCCCCACCCGGGAACAACGTCCGCCCAAAAccc > 2:1378109/1‑238 (MQ=255) gggcggtgggTTGGCGTCCAGAGTCCCCCCGTTATAAAGGGGCGGTCTGCGGACGTGTTTTTCTG‑GCAGACCATTTTTAATGGGGATCACCTCGCCCTGGTCGGTTACGCGCGGGCCGCCTTTCAGGTTTCCTGGGGGTTGT‑GACAGCGGCGCCGCATGAGCAGGTGCCCCGCCGCGCCCATTGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGtt < 2:596800/230‑1 (MQ=255) tgTTGGCTCCCAGAGCCGCCCGGCTAAAAAGCGACGGGGTGGGGTGGGTGTTTTCTG‑GCAGCCCCTATTAAAAGCTGATCATCTCGCCCTGTGCGGTTGCGCGCAGCCCCCCTTCCAGGCTTCCTGGCGGTGGC‑GACCGCAGCGCCGCAGGAGCGGGGGCGCCGCCGCGACCAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAAt < 2:889630/238‑1 (MQ=255) ccAGAAGCCCCCCGTTATAAAGCGATAGGCGGGTGAGGGTGTTTTCGG‑GCGGCCCTTATTTAAAGCGCTTCATCCCGCCTTGTTCGGTTCCGCGCAGGCCGCCTTTCAGGCTTCGGGGGGGTTGT‑GACAGCAGCGCCCCATGGGCAGGGGCGCCGCCGCCACCAATGAAGCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCtgt < 2:1051564/239‑1 (MQ=255) aGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCCGCGCCGCCTGGGCAGGGGCGCCGCCCCGACCAAAGGAACCGCCGCGGCCCTGGGACAACGCCAGCTCACTACCCCCCTTTTCCCAGGGTTTGTTTAATTCCTCCtgtg > 2:72028/1‑238 (MQ=255) aaggcacgggcggcTGA‑GGTTATTTCGGTGCAGAACTTATTCAAAGCGCCCCATCCCGCCTTTGCCGATTCCGCGCGCGCCGCCTTTCGGGTTGCCGGGCGGTAGT‑GCGAGCAGCCCCGTATGGGCGGGTGCCCGCCCGCACCCAATGAACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAgg < 2:938457/231‑1 (MQ=255) aCAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTCATATTGCGCCCCggca > 1:1394129/1‑234 (MQ=255) cgggCTGCGGGCGTTGTTTTCGG‑GCAGCCTTTTTTTAAGGGGTACCCTCGCCCCCTTTTGGTTTCCGCCCAGCCCGCCTTCCGGGCTTCCTGGGGTTTGT‑GACAGCGGCGCCGCATGAGCGGGTCCGCCCCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt < 2:1126347/236‑1 (MQ=255) cAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTT‑GACAGCAGCGCCGCATGAGCAGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt > 1:1334210/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt > 1:194610/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAAACGCCGCGCACGTGGAACAACGGCAGCTCAATACCCGCTTTTTCCCAAGTTTTGATTAATACATCCTGTGCCCTGTATTTCGCCCAGGAAGCt > 2:1207071/1‑238 (MQ=255) tgctgACGGTGGTTTCTG‑GCAGACCATATTTAAAGCGTATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCCACCAATGGAACCGCCGCGCCCCTGGAACAACGTCAGCCCCATACCCCCCTTTTCGCAGGTTTTCATTAATGCATCCTGGGCCTGGTATTTCTGCCAGGAAGCGTCCAt > 2:1160170/1‑238 (MQ=255) ctgACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATc > 1:1199554/1‑237 (MQ=255) ttttttCTG‑GCCGACAATTTTCAAAGCGGCTCCCCCCGCCCTGTTGGTTTGCGCGCGCGCCCCTTTTCGGTCTTCGTGGGGGTTGT‑GCCACCGCCCCCACTGGAGGAGGGCCCCCCCCCCGACAAAGGTAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGc < 2:1334210/235‑1 (MQ=255) tgttttCTG‑GCATACCATATTAAAAGCGTCCCCCCCCGCCCTGTTCGTTTCCGCGCGGGCCCCCTTTCAGCCTGCCTGGCGGTTGT‑GACAGCAGCGCCGCAGGAGCGGGGGCGCCGCCGCGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGc < 2:194610/235‑1 (MQ=255) tttCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCCCCGCGACCGTGGGACAACGTCACCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCACGAAGCTGCCATCACTCCCGCATCt > 2:1287046/1‑239 (MQ=255) g‑gCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCtttt > 1:198583/1‑237 (MQ=255) cAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATg > 1:1030215/1‑182 (MQ=255) gACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGTCGGTTGT‑GACAGCAGCGCCGCCTGAGCAGGGGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCATGTTTTGCTTAATCCCTCCTGCTCCTGATATTTCGTCCAGGGCACTTCCATCACTCCCGCATCTTTTTCTCAg > 2:327242/1‑239 (MQ=255) gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGGGCCGCCGCGACCAATGGAACCGCCGCGGCCGTGGGACAACGTCAGCCCAATACCCGCTTTTTCGCAGGGATTGATTAATGCATCCTGTGCCTGATATTGCGACCAGGAAGCTGCAATCACTCCCCCATCTTTTGTCGGGTACGAATCGGCAatca > 2:325215/1‑239 (MQ=255) gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGGACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTACCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 2:120491/1‑239 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGGAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCCGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 1:380892/1‑238 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCCGGAAGCTGCCATCACCCCCGCCTCTTTTGCTGCTGCGGAATACCCAatca > 2:1039839/1‑238 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 1:784876/1‑238 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 1:786479/1‑238 (MQ=255) gCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCGGCCATCACTCCCGCCTCTTTTGGTGAGTCGGGATAGCCAATCATCACCa > 2:398153/1‑236 (MQ=255) cTGTTCGGTTACGCGCACGCCGCCTTTCGGGCTTCCGGGGGGTGGT‑AAGAGCGGCGCCGAAGGGGGAGGTGCGCCGCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGtt < 1:261934/239‑1 (MQ=255) gTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGttt > 2:394447/1‑238 (MQ=255) ttCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTg > 2:1293107/1‑238 (MQ=255) ttCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTg > 2:253957/1‑238 (MQ=255) ttACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGATGAGTCGGAATAGCCCATCATCCCCATCTGTTTGCCCTgc > 1:1014027/1‑238 (MQ=255) cgcgCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTCCTGAGTCGGAAAAGCCAATCATCACCATCTGTTTGCCCTGCATc > 2:60029/1‑239 (MQ=255) cccgcggCCGCCTCCCAGGCGTCGGGGCGGTTGC‑CACAGCGCCGCCGAGTGAGCGGGCGCGCCGCCGCACCAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCa < 2:1054388/234‑1 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCCGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGGTTGCCCTGAATCAg > 2:705671/1‑239 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTTCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAAACAg > 2:1271521/1‑239 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc > 1:977951/1‑230 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGCGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGACATCACTCCCGCCTCTTTTGCTGAGTCGGAATATGCCATAATCACCATATGTTTGCCCTGAAtacg > 2:749779/1‑236 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGG‑GACAGCAGCGCCGCATGAGCATGGGCGCCGCCGCGAACAATGGAACCGACGCGACCCTGGAACAACGTCAGCTCAATAACCGCTTTTTCGAAGGTTTTGATTAATGCAACCTGTGCCTGATATTGCGCCCAGGAAGATGCCATCACTCCCCCCTGTTTTGCTGCGTGAGGATAGCCAAACATCACCATCTGTTTGCCCTGAATCAg > 2:274557/1‑239 (MQ=255) gggCCCCTTTCCAGCCCTCCGGGCGTTTGG‑GACGGCAGCCCCGCGAGAGCGGGTGCCCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc < 1:749779/237‑1 (MQ=255) gccgccTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCAc > 1:1075699/1‑239 (MQ=255) ccTTTCAGGCTCCCGGGCGTTTGA‑GACCGGCGCCCCGCGTGAGCAGGTGCCCCGCCGAGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:673273/239‑1 (MQ=255) ttccAGGCTCCCTGGCGGTTGT‑AACGGCGGCGCCCCATGGGAGGGGCCGCCGCCGCGCCCAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATAcc < 1:60029/236‑1 (MQ=255) ccggCTTCTGGGGGTTTGT‑GACAGCACCCCCGAAGGGGCGGGCGCCCCGCCGCGCAAAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt < 1:786143/237‑1 (MQ=255) aGGCTCCCTGG‑GGTTGTGGACAGCGCCCCCGCAGGGGCGGGTCCCCCGCCCAGCACATGGAAACCGCCGCGACCGTGGAACAGCGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt < 1:113904/238‑1 (MQ=255) tCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCCGTCAatat > 1:368268/1‑239 (MQ=255) tCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCA‑CTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATAtt > 1:1171110/1‑239 (MQ=255) ttGT‑GACAGCCGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACCTCAGCTCAATACCCGCTTTTTTGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTTGGCCCAGGAAGCGGCCATCACTCCCGCATCTTTTGCTGAGTCGGACTAGCCAATCATCACCATCTGTTTGCCCTTAATCAGGCCACGATACCAGGCAATATTGcgca > 2:446570/1‑236 (MQ=255) ggaaCAGCGGCGCCACATGGGCGGGGGCCCCGCCGCGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTgg < 1:1378109/236‑1 (MQ=255) accgccgcAGGGCCGGGGGCCCCGCGGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCAt < 1:1243984/234‑1 (MQ=255) gcgcCGCATGAGGGGGTGCGCCGCCGCCACAAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGAc < 1:398153/238‑1 (MQ=255) ggggggTGCCCCGCCGTGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg < 1:1207071/234‑1 (MQ=255) gCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgtt > 1:1025865/1‑239 (MQ=255) ggTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgttgt > 2:1409572/1‑238 (MQ=255) tGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCAt > 2:758479/1‑120 (MQ=255) tGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgttgtt < 1:1160170/237‑1 (MQ=255) tGCGCCGCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCAt < 1:758479/120‑1 (MQ=255) | GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTT > NC_000913/4151094‑4151565 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |