| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,977,527 | G→T | 17.5% | *417L (TGA→TTA) M1M (ATG→ATT) † |
wzxE → wecF → |
O‑antigen translocase TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,977,527 | 0 | G | T | 17.5% | 159.6 / 2.9 | 75 | *417L (TGA→TTA) M1M (ATG→ATT) † | wzxE wecF | O‑antigen translocase TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| Reads supporting (aligned to +/- strand): ref base G (34/26); new base T (12/2); total (47/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.53e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.44e-01 | |||||||||||
TAGTGGGTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGT > NC_000913/3977290‑3977761 | tAGTGGGTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGa < 2:1086012/239‑1 (MQ=255)tAGTGGGTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGa < 1:393903/239‑1 (MQ=255) gTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTa < 1:449253/238‑1 (MQ=255) gTGATGTGTTAAAAGGTGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTa < 2:798082/238‑1 (MQ=255) aTGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCTTGTCTTTatttg > 2:409781/1‑235 (MQ=255) aTGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGa > 1:1130431/1‑239 (MQ=255) gtTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCa < 1:103497/239‑1 (MQ=255) tGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGGGTAGGCGGGCCTGTCTGTTCTGTTTCTCGTTCttt > 2:508916/1‑237 (MQ=255) gggCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTTCTCTGGCGGTGGCGGGCATGACTGTATTGATTCTCGTACTtgg > 2:490307/1‑239 (MQ=255) gggCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTATTGATTCACGTAATggg > 1:1039004/1‑239 (MQ=255) gggCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACCCTGGCGGAGGCGGGCATTATTCTTCTGTTTAGCGTTCTggg > 2:546340/1‑239 (MQ=255) gcgcTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGa < 1:489067/238‑1 (MQ=255) ttATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGa < 1:71471/211‑1 (MQ=255) ttATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGa < 1:283395/239‑1 (MQ=255) tttGGGTAACTGGTGATCGGCAAATCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGGTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGGGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCt < 2:527445/239‑1 (MQ=255) ggTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTAGGGCTGGCGAGCATGACTGTACTTTTTTATGTACTGGGGTCGGATAT‑CCCCCa > 1:273151/1‑238 (MQ=255) tGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTAATCTGGTGTAGTCGGGCATGTCTGTACTGATTCTCGTACTGGGATCGTATAA‑CCCTCACCATaaac > 2:443689/1‑237 (MQ=255) gTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCAGGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCgg < 1:123979/237‑1 (MQ=255) tCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAAAC‑GGTTT‑GGGGttt > 1:896576/1‑239 (MQ=255) tGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTCTTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTTCTTGTTCACGGACTGGGCTCCGAGAT‑TCCCCACCCTAACCGGACC‑ATTTTGGTGGTTTTTAATTTA‑cgcctggac > 2:562856/1‑232 (MQ=255) tGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGACCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTAATCTGGCGTAGGCGGGCGTGTCTGTAATTAATCACGTAATGGGATAGGATATCCCCTCA‑CATAACTCCAAC‑GGATT‑GTGGGTTTTTACTGA‑CGCGCtcccc > 2:746243/1‑234 (MQ=255) gCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATTACTGTACTTATTCACGTACTGGGATCGGGTAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGGcgcg > 1:389451/1‑239 (MQ=255) gCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTTACGTACTTGGGTCGGATAT‑CCCTCACCATAAACGAACC‑GTTTT‑GCGGTTTTTCTATTA‑CGCGCTGGCcgcg > 1:778568/1‑239 (MQ=255) gCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTCTTTTTTCTCTTCCGTTGCGGGGGTTGGCTTTACTGACTTAAGTCCTTGGATCGGGGAT‑CCCCCCCCCTAAACCAACT‑CTTTT‑TCCGTTTTATAATCG‑CGCGCtttcacc > 2:3861/1‑232 (MQ=255) cGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATTTCTGTACTGTTTTACGTACTGGGGTCGGATAT‑CCCTCACCCTAACCCAACC‑GTTTT‑TCGGTTTTTTAATGA‑CGCGCTGGCcccg > 1:1065753/1‑238 (MQ=255) tGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTTATCTGGGGTAGGCGGGCATGACTGTATTTAGTTCCGTTATTGGGTTGGGTAT‑CCCTCACCCTTACCGCACC‑GTTTT‑GCGGGTTTTTACTGT‑CGCGCCTGCCGCGCACAGCGCGCAcgcgcgcggggttt > 2:561123/1‑233 (MQ=255) tGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTa < 1:3861/239‑1 (MQ=255) tGGTAATTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATgg < 1:897591/239‑1 (MQ=255) gTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCCCCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGG‑CGCGCTGGCCGCGACGAGCGAGCACCCGCGCGGG‑TTTTTGgtt > 1:401267/1‑239 (MQ=255) gTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGAAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAAGCGGGCCATACTTTACTTGTTCACGTACTGGGATCGGATAT‑ACCTCCACATAAACGAAAC‑GTTTT‑TGGGTTTTTCAATGA‑CTCGCTGGCCGCGCACCGCCAACTCCCGCCCGAG‑TTTTTGgtt > 2:859220/1‑239 (MQ=255) cTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATTACTTTACTTATTTACGTACTGGGATTGGATAT‑CCCCTCCCATAACCGAACC‑GTTTT‑TCGGTTTTTCAATGG‑CGCGCTTGCCCCGACCCGCGCGCCCCCGCGCGGG‑TTTATTGTTG‑TTGTGAAgg > 2:608072/1‑238 (MQ=255) tGGCTAATCCCTGCGCATGTTGCACTGGTCGCGTCGCAGGCATATATGGCAACCTATATCGTCTATTTTTCTCTTTGTTGTGTCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGgac < 2:349133/239‑1 (MQ=255) tGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGGGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGgac < 1:646768/239‑1 (MQ=255) ggCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGgacg < 2:1130431/239‑1 (MQ=255) ctgaTCCCGGCGCATGGTGCACTGGGCGCGGCGAAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGgacga < 2:778568/235‑1 (MQ=255) cTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑cc < 1:779283/144‑1 (MQ=255) cTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCAACATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGgacga < 1:720651/238‑1 (MQ=255) tCCCTGCTCAGGGTGCACTGGGCTCGGCGTAGGCATATATGGCAACTTAGAGCGTCTATTTTTCTCTTTGTTGTAGCGTGTGTTGACGCTGGCGTAGGCGGGCATTACTGTACTGATTCACGTACTGAGATCGGATAT‑CCCTCACCATAAACGAACC‑GTTTT‑GCGGTTTGTTAATGA‑CGCGCTGGCCGCGACGAGCGATCACGCTCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCt < 2:795890/239‑1 (MQ=255) tCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTGCTGGTTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGGTGGCCGCGACGGGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCt < 1:509747/239‑1 (MQ=255) ccTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCt < 2:505470/237‑1 (MQ=255) gcgcATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTCTATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTTGCGTAGGCGGGCATGTCTTTTTTGATTCACGTACTGGGATCGGCTAT‑CCCTCCCCCTAACCGCAAC‑GCTTT‑TCGGCTTTTTAATGA‑CGCTCTGGCCGCGCCACACGAGCACGCGCCCGCG‑TTTTTTGTTT‑TTGGCGAGGACGACTGCCTa > 2:419816/1‑236 (MQ=255) gcgcATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATTACTGTACTGATTTTCGTACTGGGATTGGATAT‑CCCTGACCATAACCGACCC‑GTTTT‑GCGGGTTTTCAAGGA‑CGCGCCTGACGCGACGCGAGATCACGCGCGCGGG‑TTTATGGTTG‑GTGTGCAGGAGGACGGCTTAAgc > 2:612105/1‑238 (MQ=255) gcgcATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGGTCGGGTAT‑CCCTCACCATAACCGAACC‑GTTTT‑TCGGGTTTTTAATGA‑CGCGCTGGCCGCGGCGAGCGAGCACGCGCGCGGG‑TTTTTGGGTG‑TTGGCAAGggcggcggccttagg > 1:836843/1‑233 (MQ=255) cgcATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGTTTTACGTACTGGGGTCGGGTAT‑CCCTCACCATaa > 2:779283/1‑144 (MQ=255) ggTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCCTTACTTTACTGATTCACGGACTGGGGTCGGATAT‑CCCTCACCCAAACCGAACC‑GTTTT‑GCGGTTTTTTCATGA‑CGCGCTGGCCGCGACCAGGGGGCACGCGCGCGGG‑TTTTTTGTTG‑TTGGGCAGGACGCCGGCGTAAGTggtcg > 2:1032667/1‑234 (MQ=255) tGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGgac < 1:532402/219‑1 (MQ=255) gCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGt < 1:997598/239‑1 (MQ=255) tGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGGCTGACTGTACTGATTCTCGTACTTGGATCGGGTAA‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGGTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCCCGCGCGCGGG‑TTTATGGGTG‑TTGGCAAGGACGGCGGCGTACGTGATAGCTGGCCgg > 2:1215270/1‑239 (MQ=255) cgcggcgcAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGGTGGCGGGCATGACTGTACTGATTTACGTTCTGGGATCGGATAT‑ACCCCACCATAACCGGACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTTGCCGCGACGAGCGAGCCCGCTCGCGGG‑TTTTTGGTTG‑GTTGGTAGGGCGCCGGCTTATGTGGTAGCTGTCCGGCGCt > 2:235164/1‑239 (MQ=255) cgcAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTTCTGTTTCACGTACTGGGGTCGGGTAT‑CCCTCACCCTAACCGAACC‑GGTTT‑GTGGGTTTTCTATGA‑CGCGCCTGCCGCGACCAGCGCGCACGCGCGCGCG‑GTTTTGGGTG‑TTTGCCAGGGCGGCGGGTTACGTGGACGCTGTgcggcggcttttt > 2:29639/1‑232 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTTCTCTCGCGTAGGCGGGCATTTGTGTCGTGATTTGCGTACTGTGGTTGGATATAACCTCCCCA‑AACCCTAAC‑GCTTT‑TTGGTTTTTTTATGA‑CGCCGCGGCCACTACTAGCGGGCACACCCCCGGG‑TTTTTGGTTG‑TTGGGCAGGACGACGGCCTAAGAACTAGCCGTACCGTCTTTTCTTTGCGATTTTTCACTg > 2:291331/1‑239 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTTGCGTAGGCGGGGATGTCTTTACTGTTTCACGTACTGGGATTGGATAT‑CCCTCCCCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGT‑CGCGCCTGCCGCGACGAGCGAGCACTCGCGGGGG‑TTTATGGTTG‑TTGGTCAGGACGACGGCTTAACGGATAGCTTTCCGGGGCTTTCTGTGCAATTTTTCCCTg > 2:743224/1‑239 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGGATTACTTTTCTGATTTACGGACTTGGGTCGGGTAT‑TCCTCACCATAACCGGACC‑GTTTT‑TCGGGTTTTTAATGA‑CGCGCTGGCCGCGGCCAGCGAGCCACCGCGCGGG‑TTTATTGTTT‑TTGGCAAGGGCGGCGGCTTCAGTGGTAGCTGTCCGGCGGTTTTTGTGCACATTTTccccg > 2:1133342/1‑237 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCCTGACTGTTCTTATTTACGTTCTTGGATCGGATAT‑TCCTCCCCCTAACCGAACCGGTTTT‑GC‑GTTTTTTAATGA‑CGCGCTGGCCCCCACGAGCGCGCACCCGCGCGGG‑TTTTTGGGTGTTTGGCAGGGA‑GGCGGGCTAAGTGATAGCTGGTCGGCGCCTTTTGTGCCATTTTTCCCTg > 2:358287/1‑239 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATTACTGTACTGTTTCACGTAATGGGTTCGGATAT‑CCCTCACCTTAACCGAACC‑GTTTT‑GCGGGTTTTTAATGA‑CGCGCCGGCCGCGACGAGCGGGCCCGCGCGAGGG‑TTTTATGTTG‑TTGGCAAGGGAGACGGACTCCGGGATAGCGGTGCGGGGCCTTTTGTGCTATTTTTCCCTg > 2:797037/1‑239 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTAATGTTTTACGTACTTGGGTCGGATAT‑CCCTCACCATAACCGCAAC‑GGTTT‑TCGGGTTTTTAATGA‑TGCGCTTGCCGCTACCGACGAGCCCGCCCGGGAG‑TTTTTTGTTT‑TTGGCAAGGGCGACGGCTTAGGGGATAGCTGTCCGGGGCTTTCTGTGCCATTTTTCCCTg > 2:892166/1‑239 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCAAAACTTTATTTAGTCACGTACTGGGATCGGGTAT‑CCCCCACCCAAACCGAACC‑GTTTT‑GCGGTTTTTTAATGA‑TGCGCTGGCCGCGACGAACGAACACGCGCGCGGG‑TTTTTGGTTT‑TTGGTCAGGATGACGGCATGAGTGATAGCCGTGCGCGGGTTTCTGTGCAATTTTTCCCtc > 2:1054202/1‑238 (MQ=255) cAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTATTTTCTCTTGCGAAGGCGGGCATGTCTGTTCTTTTTTCAATGCTGGGGTTGGAGTA‑CCCTCAACATAAACTGACC‑GTTTT‑GCGGGTTTTTCATGA‑AGCGATTGCCGGCAACAGCGAGCGCGCACGCGAG‑TTTATTGGTG‑TTGGCGAGGACGTCGGACTAAGTGGTAGCTGTGCGGGGCTTTCTGTGTACttttttactg > 2:1085485/1‑234 (MQ=255) gTCTATGTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCg < 1:546340/239‑1 (MQ=255) tCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTCGGCGGGTATGACTTTACTTATTTACGTTCCGGGGTTGGATTT‑CCCCCCCCCAAACCGAACC‑GTTTT‑GCGGGTTTTCAATGG‑CGCCCCCGCCGCCGCCGGCGCGAACCCGCTCGGG‑TTTTTGGTTG‑TTGGGACGGCCGACGGCTTAAGTGTGAGGTGTCCGGCGCTTTTTTTGCAATTTTTCCCCGGGAAAAAAta > 2:1113765/1‑236 (MQ=255) tCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGCCGGGCATGTCTTTTCTGTTTCTCGTACTGGGATCGGATAT‑CCCTCCCCATTACCGAACC‑CATTT‑GCGGGTTTTTAATGG‑ACCGCTCGCCCCCCCGCGCGACGCCCCGCGCGGGCTTTCTGG‑TG‑TTTGCAAGGAGCACCGCGTTAGTGGATGCTGTTCGGCGCTTTCTTGGCCAATTTTTCCTCGGcaaaaactg > 2:161036/1‑235 (MQ=255) tATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATTAATTTATTGGTTTACGTACTGGGGTCGGATAT‑CCCCCACCATAACCGAAAC‑GTTTT‑GCGGGTTTTTCATGACCGCCCT‑GCCGCCACGAGCGAACACCCGCCCCGG‑TTTTTGGGTG‑TTTGCATGGGCGCCGGGCTTAGCGGACGCCGTTCCGCGCCTTTTGTGGTATTTTTCCCCGGGGAACAAttcctg > 2:1061760/1‑234 (MQ=255) tATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTTGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGGTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCCCCCGCGCGAG‑TTTATGGTTG‑TTGGCCAGGACGGCGGCGTAAGGGATAGCTGTCCCGCGCTTTTTGTGCAATTTTTTCCTGGGGAAAAATCGCtt > 2:12649/1‑238 (MQ=255) tATTTTTCTCTTTGTTGTGGCGTGTTTTTAATCTGGCGTAGGCGGGCATTACTGTACTGATTCACGTTCTTGGATCGGGTAT‑TCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACCGGCGAGCACGCGCGCGGG‑GTTATGGGTG‑TTGGGAAGGGCGACGGGCTAAGGGGTAGCTGTCCGGCGCTTTCTGTGCGATTTTTCCCTGGGAAAAAATCGCtc > 2:1016988/1‑238 (MQ=255) tgttgtGGCGTGTTTTTACTCTGGCGTAGGCGGGGCTGACTTTACTTTTTTCCGTATTTTGAACGGGTAT‑TCCTCATCATAAACCAACC‑GTTTT‑TCGGGTTTTCAATTA‑AGCGCTTGCCCCGAAGAGCGACGCCACGGGCGAG‑TTTTTTGTTG‑TTTGCCAGGAAGGCCGGTTACGACATAGCTGTCCGGCGCTTTCTGTGCAATTTTTTCCTGGGCAAAACAACCTGGCGGAAggcgtt > 2:951209/1‑234 (MQ=255) tgttgtGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTTACGTACTGGGGTCGGGTAT‑CCCTCACCATAACCGAAAC‑GTTTT‑TCGGTTTTTTAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGGAAGGACGACGGCTTAAGTGATAGCTGTCCGGGGCTTTTTGTGGAATTTTTTCCTTGGGAAAAATCGCTGGGGGGAGAgg > 1:95217/1‑237 (MQ=255) ttgtGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCAcgcgcg < 1:214734/137‑1 (MQ=255) ttgtGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATAA‑CGCGCTGGCCGCGACGATCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCTCTTTCTGTGCAATTTTTCCCTGGGAAAAAAGCGCTGGCGGAAGCGGTc < 1:165463/237‑1 (MQ=255) ggCGTGTTTTTACTCTGGCGTAGGCGGGCATTACTGTACTGATTCACGTACTGGGTTCGGATAT‑CCCTCACCATAACCGAACC‑TTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATcgcg < 1:1045464/239‑1 (MQ=255) ttttACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCa < 1:508916/238‑1 (MQ=255) ctGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGAGAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTa > 2:607122/1‑238 (MQ=255) ggCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGTTCCGATAT‑CCCTCACCATAACCGTACC‑GTTTT‑GCGGCTTTTCAATGA‑CGCGCTGGCCCCGCCGAGCGAGCCCGCGCGCGTG‑TTTATGGTTG‑TTCGCAAGGACGACGGTTTTAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCTCTGGCAATAAATCGCTGGCGGAAGCGGTCATCGCGAAGGCCAAAGATAAcc > 2:701289/1‑239 (MQ=255) gCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGt > 1:1024699/1‑239 (MQ=255) gCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGt > 1:1097093/1‑239 (MQ=255) gCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGt > 1:1094356/1‑239 (MQ=255) | TAGTGGGTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATAT‑CCCTCACCATAACCGAACC‑GTTTT‑GCGGTTTTTCAATGA‑CGCGCTGGCCGCGACGAGCGAGCACGCGCGCGAG‑TTTATGGTTG‑TTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGT > NC_000913/3977290‑3977761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |