| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,003,509 | T→G | 22.3% | T224P (ACC→CCC) | rarD ← | putative chloramphenical resistance permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,003,509 | 0 | T | G | 22.3% | 101.1 / 2.5 | 59 | T224P (ACC→CCC) | rarD | putative chloramphenical resistance permease |
| Reads supporting (aligned to +/- strand): ref base T (16/26); new base G (14/2); total (31/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.76e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCAA > NC_000913/4003276‑4003739 | tatatTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTg > 1:512100/1‑238 (MQ=255) tatttGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAGCGGGACGGGAAGGAGAATACGggcggc > 2:722052/1‑239 (MQ=255) tCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGGAAGGTAGTGACAATACCGGCGGCGAACAGCAGTa > 1:22920/1‑239 (MQ=255) gagTAGAAATCGCAGCCATCACAAAAAGGGCCACCGCGACCCAAATAAAGGCGAAAGTCCCCATCTGATCTGCACCCGGTTTTGCACCATAAAACGTCACAGCCAGCAGGAACAGCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCGGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATGCCGGCGGCGATCAGCAGTAAATTCAg < 2:221508/236‑1 (MQ=255) cGTATACATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATACAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAACAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGGAAAAAACAACAGCGGTACGGGAGAGACAAAAGCCGCGGCCGGCAGGAGTAAAATCAACg > 2:902853/1‑239 (MQ=255) cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGCGACGCAAGCGCGGGGCAGCGGCGGCAAAACACAACAGAGGTCAGGTGGTGACAATACCCGCGGCGGACCGCAGAAAAtcacggc > 2:358979/1‑233 (MQ=255) cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTGGGGACAATACCGGCGGCGATCAGCAGGAAATTCAGCg > 1:826424/1‑239 (MQ=255) cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGGACGGTAGTGACAATACCGGCGGCGAGCAGCAGTAAATTCAGCg > 1:720793/1‑239 (MQ=255) cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACAAAAAAACGGGTCGGTAGGGCACATACCGGGGGCGGTCCGCCCGAAAATCAGca > 2:155679/1‑238 (MQ=255) cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAAACCAACAGCGCAACGAGAGAGCCGATACCCGCAGACATCAGAAGAAAAATCAGcc > 2:302874/1‑238 (MQ=255) cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAAAACAACAGCGGGACGGTAGTGACAATACCGGGGGCGATCAGCAGGAAATTCAGCg > 1:358506/1‑239 (MQ=255) gTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTGAAAAACAACAGCGGGACGGTAGTGACAATAACCGCGGGGGTCAGGAGGaaaattcacg > 1:541337/1‑231 (MQ=255) gTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAACGGGACGGGAGGGACAAAACCGGCGGCGAACAGCAGGAAAATCAGcc > 1:230837/1‑237 (MQ=255) gCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCCAGCGCGTGGCAGCGGCGGTAAAAAACCAAAGCGGGACGGTAGAGGCCATACCCGCGGCGGTGAGGCGGAAAATCAGCGAcctaagggt > 2:164876/1‑231 (MQ=255) gCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGtt < 2:512100/239‑1 (MQ=255) gCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGACCGGGAGTGACAAAACCGGCGGGGGCCAGCCGAAAATTCAGGCACACCggggt > 1:450422/1‑237 (MQ=255) tccatcACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCGCCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTg < 1:1053157/239‑1 (MQ=255) gcCACCCAAATAAAGGCGAAAGTCACCAGCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAg < 1:718824/237‑1 (MQ=255) cacaaaGGCGAAACGCACCATCTGAGCGGCACCCGGTTTTTCACCATAAAACGTAACAGCCAGCAGGAACATCAGGGTCGGGCCAATGTACTGGAAAAAGCCTAACGTGGAGAGACGCAAGCGCGTGGCCGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACAGCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCaa < 2:620781/236‑1 (MQ=255) ggCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAGCGGTACGGGAGTGACCCTTACGGCGGGGGACAACAGAAAATTCAGCGACATCGGGAGTTGCCCCACTAGGGTGGTCGAGATGTCGGCaacaaaca > 2:106475/1‑233 (MQ=255) aaaGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGGAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCTGCCATaacaaac‑ac > 2:948045/1‑238 (MQ=255) ccATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACCAAACAATGGTACGGGCAGGACAAAAACCGCGGGGGTCAGTAACAAATTCAACGCAACGGGGGTTTGCCCCCACTTGCTGGGTGAGCTGTCGGGAATCACTAAC‑Agcgaacg > 2:240202/1‑232 (MQ=255) aTCGACGCCCGGTTTTTCACCATAAAGCGGCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCGGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCa < 2:797611/239‑1 (MQ=255) cGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAATCGGGAAGGGAGTGACAATACCCTCGGCGATCAGCCGGAAATTCCGCTGCAACGGGGTTTGCCCCATATTGGTGGTTCAGCTGTTGGCAATCACAAAA‑ATGGAAATTGCAGCCACg > 2:134455/1‑239 (MQ=255) cccGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGGAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAACAAAA‑AAGGAAATTGCCGCCACGGgca > 1:976304/1‑238 (MQ=255) ccGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGGAAATTCAGAGACATCCGGTTTTGCCCCATATGGCTGGTTGAACTGTCGGCAATAGCAAAC‑AGGTAAAATGCCGCCACGGgcagc > 1:1098458/1‑239 (MQ=255) ttCACCAAAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTCACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCcaca < 1:554688/239‑1 (MQ=255) tAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGCAGGGACAATATCGGCGGCGGTTAGCAGTAAATTCAGCGACATCGGGCTTTGCCCCaca > 1:875733/1‑169 (MQ=255) aaagcgagaAGGAACAACAGCGTGGGGCAAAGGAACTGGAAAAAAACTAACGTGGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAATACAACAGCGGTACGGGAGTGACAATTGCGTGGTGGGTCAGCAGTAAATTCAGCGACATCGGGTTTTGCCGCATAAGGCTGGTTGAGCTGTCGGGAATAGCAAAC‑AGTTAAATTTTCGGCACGGGCAGAAGCCACATGGTTTCGATTAAc < 2:338581/235‑1 (MQ=255) ccagcAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGAAAAACCAAAAAACCGTACGGGAGAGGCAAATACGGGGGCGGTCAGCAGCAAATTCCGGGACATCGGGGTTTTCCCCATATTGGTGGTTGGGCTGTCCGCAATAGCAAAC‑AGGGAAATTGCCGCCACCGGCAGTCGCCACCGTGTTTCTGTTAACAAG‑ccc > 2:1103836/1‑238 (MQ=255) aaCATCAGCGTCGGGCCAAGGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTg < 1:164876/236‑1 (MQ=255) gCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACCACAGCGGGACGGGAGGGACAATAACGGCGGCGAGCAGCAGGAAATTCAGCGGCATCGGGGTTTGGCCCACATGGCCGGGTGAGATGTCCGCCACAGCAAAC‑AGGGAAATTGCCGCCCCGGGCAGCAGGCACATGGGTTCGCATAAAATG‑CCCGGTTGCCCCTCACCg > 2:35987/1‑239 (MQ=255) ggcGGTCCAAGGGACTGAAAAAAGCCTAACTGTGAGAGACGCAATCGCGTGGCAGAGGCTGTAAAATACAAGAGAGGGACGTTAGTGACAAGACCGGCGGCGAGCAGCAGAAAATGCAGCGACATCTGGTGTTGCCCCATATGGCGGGTTGAGCGGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGTCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACgt < 2:760540/236‑2 (MQ=255) cGGGCAAATGTACTGGAAAAAGCCTAACGTTGGGAGGCGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCa < 2:976304/238‑1 (MQ=255) cAATGTACTGGAAAAAGCCTAACGTAGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAAtcttc < 1:948045/239‑1 (MQ=255) aTGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATcttctt < 1:280155/239‑1 (MQ=255) tGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGcggtacggt > 1:146748/1‑68 (MQ=255) tGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGcggtacggt < 2:146748/68‑1 (MQ=255) tGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAAAACAACAGCGGGACGGGAGAGACAATACCGGCGGCGGGAAGCAGTAAATTCCGCGGCGGCGGGGTTTGCCCCATATGGCGGGTTGGGCGTTCCGCAATAGCAAAA‑CAGTAAATTGCCTCCACGGGGAGACGCACCATGGTTTCGGATAACAAC‑ACGGTTTGGGGGTGAAAGGCAATCTTCTTTCGtc > 2:1174769/1‑237 (MQ=255) tGGAAAAAGACTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAc < 2:1085995/239‑1 (MQ=255) aaaaGCCTAACGGTGGGAGGCGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATCCCGGCGGGGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCGTATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGa < 2:22920/239‑1 (MQ=255) aGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGGACGGGAGTGACAATACCGGCGGCGGTCAGCAGTAAATTCAGCGACATCGGGGTTTGCCCCATATGGCTGGGTGAGCTTTCGGCAATAGCAAAA‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGGTTCGCTTAACAAG‑CCGGTTTGGGCCTCAACGGCCATCTTCTTGGCTAC‑CCGACCg > 2:977540/1‑239 (MQ=255) aGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAGCGGTACGGTAGTGACAATACCGGCGGCGGTCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCCCGGGGAGCAGCCCAATGGTTTCGATTAACATGCCCGGTTTG‑GCCTCAACGGCAATCCTCTTTTGTAC‑Caaaacg > 2:1008510/1‑234 (MQ=255) tGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAATCACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCaa < 1:209657/239‑1 (MQ=255) tGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCa < 1:106475/238‑1 (MQ=255) agagaCGCAAGCGCGTGGCAGCGGCGGTAAAACACCACAGCGGGACGGTAGTGACAATACCGGCGGCGATCAGCCGTAAATTCAGCGACATCGGGTTTTTCCCCATATGGCTGGGTGAACTGTCGGCAATAACAAACAAGGGAAATT‑TCGCCCCCGGCCGCAGCCACATGGGTTCGCTTAAACTGCCCGGTTTGGGC‑TCAACGGGAAACTTCTTTTGTACACAAACCGAAGAGGGCaaa > 2:656526/1‑239 (MQ=255) agagaCGCAAGCGCGTGGCAGCGGCGGTAAAAACCAACAGCGGTAAGGGAGTGAAAATAACGGCGGCGATCAGAAATAAAATTAGGGACATAGGGTTTTTCCCCATATGGCTGGTTGTGATGTCGGAGAAAGCAAAA‑AGGTAAATTTTCCCCACGGGAAGAATCCCCAACGTTTCCAATTACAAG‑CCGGGTTTCCCGTTAAAGAGAACTTTCTTTCGTAC‑AAAGCCGTAGAAAGCaaa > 2:1073912/1‑238 (MQ=255) gagaCGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCaaaa < 1:155679/238‑1 (MQ=255) cGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTaa < 1:722052/238‑1 (MQ=255) gCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAAt < 1:161928/239‑1 (MQ=255) aaGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACGTCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGc < 1:1174769/239‑1 (MQ=255) cAGCGGCGGTAAAATACAACAGCGGTACGGGAGTGACAATACCGGCGGCGATCAGCAGTAAATTAAGCGACATCGGGTTTTGCCCCAGATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAg < 2:541337/238‑1 (MQ=255) cAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAg < 1:902853/238‑1 (MQ=255) cAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAg < 1:358979/238‑1 (MQ=255) gcggggGTAAAACACAACGGCGGTACGGTAGTGACAATACCGACGGGGAGCAGCAGGAAATTCAGCGACATCGGGTTTTGCCGCATATGGATGGTTGAGCTGGCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTGCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAgcg < 2:12275/238‑1 (MQ=255) ggcggTAAAACACAACAGCGGTACGGTAGGGACAATCCCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAgcg < 2:937122/236‑1 (MQ=255) ggcggTAAAACACAACAGCGGTACGGTAGGGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAgcg < 2:230837/236‑1 (MQ=255) caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGTAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGAt < 2:204395/141‑1 (MQ=255) caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGAt > 1:204395/1‑141 (MQ=255) caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGaa > 2:1070579/1‑238 (MQ=255) caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATA‑CCGGTTTGCGCCTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGCAGGCAAAACTACATGCCAGTCCCAGCGCAATAATAGGTAGCGaa > 1:559719/1‑238 (MQ=255) cggtacggtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCaa > 2:290563/1‑239 (MQ=255) cggtacggtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCaa > 1:1173179/1‑239 (MQ=255) cggtacggtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGCTTTGCCCCATATGGCTGGTTGAACTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAAGTAGCGAACCaa > 1:674691/1‑239 (MQ=255) gttactgtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCaa < 1:1020762/236‑1 (MQ=255) gggacggtcGTGCCAGTCCCGGTGGCGATCAGCAGCAAACTCAGCGACATCGGGTTTTGCACATTATGGCTGGGTGAGCTGTCGGCAATAGCAAAC‑AGGTAAACTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGAGCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTCGCGAAc < 2:450422/232‑1 (MQ=255) | TATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCAA > NC_000913/4003276‑4003739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |