| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,803,853 | C→T | 5.2% | pseudogene (336/1476 nt) | arpB → | pseudogene, ankyrin repeats |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,803,853 | 0 | C | T | 5.2% | 251.6 / 4.9 | 77 | pseudogene (336/1476 nt) | arpB | pseudogene, ankyrin repeats |
| Reads supporting (aligned to +/- strand): ref base C (32/41); new base T (2/2); total (34/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.34e-01 | |||||||||||
GTCATTGCAATACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG > NC_000913/1803616‑1804090 | gTCATTGCAATACTCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACGCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg < 2:921554/239‑1 (MQ=255)gTCATTGCAATACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg < 2:119058/239‑1 (MQ=255)gTCATTGCAATACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg < 1:651150/239‑1 (MQ=255)gTCATTGCAATACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg < 2:811618/239‑1 (MQ=255)gTCATTGCAATACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg < 1:94685/239‑1 (MQ=255) gCAATACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGAttt < 1:326487/239‑1 (MQ=255) aaTACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGAtttt < 2:635553/238‑1 (MQ=255) aTACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtat > 2:1116000/1‑239 (MQ=255) cGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatata < 2:539536/239‑1 (MQ=255) ccTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatatata > 2:392106/1‑238 (MQ=255) ccTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatatata < 1:392106/238‑1 (MQ=255) cTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGa < 2:72827/239‑1 (MQ=255) tGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCTGCGATTTTATATATAGACa > 2:515136/1‑239 (MQ=255) tGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACa > 2:1161352/1‑239 (MQ=255) tCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGACGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatat < 1:189417/228‑1 (MQ=255) tCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGACGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatat > 2:189417/1‑228 (MQ=255) ttGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCAt > 2:459949/1‑237 (MQ=255) tGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACt < 2:529485/239‑1 (MQ=255) aaaaGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTa < 2:465089/238‑1 (MQ=255) aaaaGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTa < 1:919228/238‑1 (MQ=255) aaaaGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTa < 1:973100/238‑1 (MQ=255) aaaaGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTa < 1:1170363/238‑1 (MQ=255) cAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCt < 1:1116000/237‑1 (MQ=255) cAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATaa < 2:827136/239‑1 (MQ=255) gagtgaaCATTGCTCCTCCGTTGAATCCATACAGCAGCATCTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATTGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTGGTCAGTAAGGCTACGAATAAAGcagt < 2:360024/234‑1 (MQ=255) gATTAAACATTTCTCCTCCTTTGAATCCATACAGCAGCATGCCCCCTTAGTCCGGAGCGCGGAATTCACATCATTTCTTTGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGAGAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagt < 2:956630/239‑1 (MQ=255) gATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagt < 1:1161352/239‑1 (MQ=255) gATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagt < 1:459949/239‑1 (MQ=255) ttAAGCATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagtc < 1:871000/238‑1 (MQ=255) ttAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagtc < 1:591544/238‑1 (MQ=255) aCATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAgtgt < 1:1019273/239‑1 (MQ=255) ttACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGAGGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATg < 2:80824/239‑1 (MQ=255) aCTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATgg > 2:936726/1‑238 (MQ=255) tcccactgtGAATACATTCCGCAGCATGGTCTCTTATGCCGGGGCTCGGAGTGCAGAGCATTACCTCGTCATCCTGCTGCAGGGAGTCTCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTTTCGAATTATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAAGCATACTGTGTCAGTAAGGCTACGAA‑AAAGCAGTCTGTGTATGGAcca < 2:824874/231‑3 (MQ=255) cctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACaa < 2:751945/239‑1 (MQ=255) cctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACaa < 1:215338/239‑1 (MQ=255) tccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCAATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGGCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACaatg < 2:1014888/239‑2 (MQ=255) ccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATGCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACaatta > 1:620308/1‑239 (MQ=255) ccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGAtt < 1:971933/173‑1 (MQ=255) ccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGAtt > 2:971933/1‑173 (MQ=255) cGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCATCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTTGCTTTAGATATTTTCTTTTGTCGAATGATGGCAACCAATGTCAGTCATATGTACGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAA‑AAAGCAGTCAGTGTATGGACaattaca > 1:824874/1‑237 (MQ=255) ttGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatatata > 1:362079/1‑179 (MQ=255) ttGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatatata < 2:362079/179‑1 (MQ=255) aTACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGt > 1:986401/1‑187 (MQ=255) aTACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGt < 2:986401/187‑1 (MQ=255) agcaTGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTc < 1:220652/235‑1 (MQ=255) caTGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGAATTACTTCGCCATCCTCCTGCAGGGCGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCACTTTAGATATTTTCTTTTGCCGAAGGATGGCAAACAATGTCAGTCATATGTCCGCGCTTTTATATATAGACAATCATACTTTGTAAGTAAGGCTACGAATACACCAGTCAGAGTATGGACAATCAAATTATGTTGTGTCA‑Gttt > 2:407937/1‑238 (MQ=255) tGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACg > 1:308038/1‑239 (MQ=255) ttAGTCCGGGTCGCGGAGTTCAGAGCATTACTTCGCCATGCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGaa < 2:995016/239‑1 (MQ=255) aGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACg > 1:440088/1‑239 (MQ=255) cGGGACGCGTAGTTCAGCGCATTACTACGCCATCCTCCTGCAGTGAGTCGCGTTATCGCGAAGAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATAc < 2:123000/239‑1 (MQ=255) aTTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGac < 1:1019153/238‑1 (MQ=255) tACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTATGTCCGGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGaca > 2:863947/1‑238 (MQ=255) cTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCca < 2:416149/239‑1 (MQ=255) cGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAGGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg > 1:858357/1‑106 (MQ=255) cGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAGGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg < 2:858357/106‑1 (MQ=255) tcctccTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACa > 1:878319/1‑238 (MQ=255) ctGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACgg > 2:1024359/1‑239 (MQ=255) cAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTGC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACggg > 2:1064825/1‑237 (MQ=255) ggAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagtc > 2:269828/1‑145 (MQ=255) ggAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagtc < 1:269828/145‑1 (MQ=255) tGGCTTCGCTTTAGATATTTTCTATTGTCGAATGAAGGCAAACAATGTCAGTCATATGACCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGCATAAAGCAGTCAGTGTATGGACAATTAAATAATGTTGTGTCC‑GTTTACAACCCGACCGATACCAACGTTACCGTCAGCGAAACCCACGGGACAGCAAGGGGCTGTCTTACGCTTGATAAGTTCATCAGTTCAg > 2:849458/1‑239 (MQ=255) cGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGAAACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCg > 1:1152898/1‑239 (MQ=255) tAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCt < 1:474675/239‑1 (MQ=255) ttttCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGAcc < 1:936726/239‑1 (MQ=255) ttCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCTGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTtcat < 2:877199/212‑1 (MQ=255) ttCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCTGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTtcat > 1:877199/1‑212 (MQ=255) ttCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTg > 1:429821/1‑239 (MQ=255) ttCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTg > 2:846069/1‑239 (MQ=255) ttCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTg > 1:908573/1‑239 (MQ=255) ttttGTCGAATGATGGCAAACAATGTCAGTCATATGTCTGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGc < 1:515136/239‑1 (MQ=255) ttGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTACATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTg > 1:955284/1‑239 (MQ=255) atgatgGCAAACAATGTCAGTCATATGTCCGCGATTGTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTgatagat < 2:308038/238‑1 (MQ=255) tgGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGtt < 2:440088/239‑1 (MQ=255) gCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTc > 1:61675/1‑238 (MQ=255) gCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTc > 1:825266/1‑238 (MQ=255) tGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGaa > 1:609581/1‑117 (MQ=255) tGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGaa < 2:609581/117‑1 (MQ=255) caTATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTg < 1:863947/239‑1 (MQ=255) atGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAATCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGTACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTGCAGGTCCCGATGCTCAGACCTGGGCTGCTAGATGTGTTCGCAACTGGTCAGTTGCTAt > 2:992325/1‑239 (MQ=255) atGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGCGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATCGATATGTTCGCAACTGTGCAATTGCTAt > 2:1176717/1‑239 (MQ=255) atGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGc < 1:543036/230‑1 (MQ=255) atGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGc > 2:543036/1‑230 (MQ=255) atGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTAt > 2:1027781/1‑239 (MQ=255) ccGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATGAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGAGAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTg < 2:620308/239‑1 (MQ=255) ccGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTg < 1:1024359/239‑1 (MQ=255) | GTCATTGCAATACGCCCTTGATTCATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCC‑GTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG > NC_000913/1803616‑1804090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |