breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,992,4380TG20.0% 133.9 / 27.9 65L429* (TTA→TGA) cyaAadenylate cyclase

Marginal new junction evidence (lowest skew 10 of 27 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 399246850 (0.910)10 (0.180) 10/504 3.4 16.7% coding (1316/2547 nt) cyaA adenylate cyclase
?NC_000913 3992473 = 50 (0.910)coding (1321/2547 nt) cyaA adenylate cyclase
* ? NC_000913 3357824 =52 (0.940)3 (0.060) 3/480 5.8 5.7% coding (3100/4461 nt) gltB glutamate synthase, large subunit
?NC_000913 3358927 = 49 (0.930)coding (4203/4461 nt) gltB glutamate synthase, large subunit
* ? NC_000913 = 113363261 (1.150)5 (0.090)
+ACCCTG
3/474 5.8 7.6% coding (1059/1209 nt) flgE flagellar hook protein
?NC_000913 1133633 = 61 (1.100)coding (1060/1209 nt) flgE flagellar hook protein
* ? NC_000913 3733010 =49 (0.890)3 (0.060) 3/492 5.9 4.9% coding (810/1542 nt) xylG D‑xylose ABC transporter dual domain ATPase
?NC_000913 3733919 = 69 (1.280)coding (200/1182 nt) xylH D‑xylose ABC transporter permease
* ? NC_000913 3360041 =44 (0.800)3 (0.060) 3/488 5.9 6.6% coding (844/1419 nt) gltD glutamate synthase, 4Fe‑4S protein, small subunit
?NC_000913 3360672 = NA (NA)intergenic (+56/‑504) gltD/gltF glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
* ? NC_000913 = 315435343 (0.780)3 (0.060) 3/486 5.9 6.9% coding (866/957 nt) yqhC transcriptional activator of yqhD
?NC_000913 = 3154366 39 (0.730)coding (853/957 nt) yqhC transcriptional activator of yqhD
* ? NC_000913 = 306849242 (0.760)3 (0.060) 3/492 5.9 6.9% coding (317/636 nt) argO arginine transporter
?NC_000913 = 3068686 40 (0.740)coding (123/636 nt) argO arginine transporter
* ? NC_000913 2887324 =51 (0.920)3 (0.060) 3/488 5.9 6.6% intergenic (‑105/‑30) ygcB/sokX Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/sok‑related sRNA, function unknown
?NC_000913 2887735 = 36 (0.670)coding (578/735 nt) cysH phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent
* ? NC_000913 2192870 =46 (0.830)5 (0.090) 3/488 5.9 10.2% intergenic (‑74/+189) yehE/mrp DUF2574 family protein/antiporter inner membrane protein
?NC_000913 2193252 = 44 (0.820)coding (917/1110 nt) mrp antiporter inner membrane protein
* ? NC_000913 = 187727566 (1.190)3 (0.060) 3/488 5.9 4.5% intergenic (+19/+3) yeaO/yoaF DUF488 family protein/DUF333 family outer membrane lipoprotein
?NC_000913 = 1877290 62 (1.160)coding (243/255 nt) yoaF DUF333 family outer membrane lipoprotein