New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3955661 =	195 (2.560)	7 (0.090)	6/494	NT	3.9%	coding (331/1545 nt)	ilvA	l‑threonine dehydratase, biosynthetic; also known as threonine deaminase
	?	NC_000913	3955904 =	159 (2.140)					coding (574/1545 nt)	ilvA	l‑threonine dehydratase, biosynthetic; also known as threonine deaminase
Rejected: Frequency below/above cutoff threshold.

TTTGATTTGCGGCATCAGTTGTTTGATCAGCACCGCCACGCCAGCAGCCAGACCGCCGCCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3955954‑3955661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTATTCGAAGATGTGCGCGCGGTGGCGGA  >  NC_000913/3955904‑3956187                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTGATTTGCGGCATCAGTTGTTTGATCAGCACCGCCACGCCAGCAGCCAGACCGCCGCCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTG                                                                                                                                                                                                                                                                                                   >  2:461572/1‑289      TTTGCGGCATCAGTTGTTTGATCAGCACCGCCACGCCAGCAGCCAGACCGCCGCCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGT                                                                                                                                                                                                                                                                                              <  2:217107/289‑1       TTGCGGCATCAGTTGTTTGATCAGCACCGCCACGCCAGCAGCCAGACCGCCGCCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCTGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGT                                                                                                                                                                                                                                                                                              <  1:460178/288‑1        TGCGGCATCAGTTGTTTGGTCAGAACCGGCACGCCAGCAGCCAGACAGCCGCCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGT                                                                                                                                                                                                                                                                                              <  2:227837/287‑1                                                                            TACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCCAAGTGATCGCCGTAGAAGCGG                                                                                                                                                                                                                        >  1:643163/1‑289                                                                            TACGCGGTCGAGATGGGCGTCCTGCTGCAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCCGCGGCGTTCTGGCTGCTTGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGG                                                                                                                                                                                                                        >  1:662627/1‑289                                                                             ACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGCTCGATCGCTTTGGCTTTCGCTTCATCAAAGGTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAATCAACTGATGCCGCAAATCAAAGTGATCGCCGTCGAAGCGGc                                                                                                                                                                                                                       >  2:464655/1‑288                                                                                                  TGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGT                                                                                                                                                                                                                                                                                              >  1:559090/1‑197                                                                                                  TGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGT                                                                                                                                                                                                                                                                                              <  2:559090/197‑1                                                                                                                                                                               CCCCTGCTGCTGGGACAGTTCGATCGCTTTGGCTTTCGCTTCAGCAAGGTTCGGGCCGTGGGGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCG                                                                                                                     <  2:662627/289‑1                                                                                                                                                                                CCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAG                                                                                                                                                                                                                              >  1:42540/1‑183                                                                                                                                                                                CCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAG                                                                                                                                                                                                                              <  2:42540/183‑1                                                                                                                                                                                                                                                                         CGCGTCGACTTTGATGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTAT                           <  1:464655/289‑1                                                                                                                                                                                                                                                                                                  GCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTATTCGAAGATGTGCGCGCGGTGGCGGA  >  2:710307/1‑289                                                                                                                                                                                                                                                                                                   CGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTATTCGAAGATGTGCGCGCGGTGGCGGA  >  1:565071/1‑288                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTGATTTGCGGCATCAGTTGTTTGATCAGCACCGCCACGCCAGCAGCCAGACCGCCGCCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3955954‑3955661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTATTCGAAGATGTGCGCGCGGTGGCGGA  >  NC_000913/3955904‑3956187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.