New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3638588 =	18 (0.730)	3 (0.120)	3/500	2.2	12.3%	coding (947/1500 nt)	pitA	phosphate transporter, low‑affinity; tellurite importer
	?	NC_000913	3638811 =	25 (1.030)					coding (1170/1500 nt)	pitA	phosphate transporter, low‑affinity; tellurite importer
Rejected: Frequency below/above cutoff threshold.

GGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGC  >  NC_000913/3638317‑3638858                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                               ggtaaacacccaggccagcagaatgctggtccaggttttacgctgtaagccgccaccatctaccaccatcgtccccgcgacagaagaggagagtacgtgagtagtggaaaccggcatcccggtataactcgccaggccgatagacactgccgccgtcatctgggcagacatcccctgagcgtaggtcatgcctttcttaccgattttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagcgcgAc                                                                                                                                                                                                                                                                               >  2:156895‑M1/272‑273 (MQ=255) ggaaaacacccaggccatcagaatgatggtcacggttttacgctgtaagccgcacccatctaccaccatcgtccccgcgccagaagaggggagtacgtgagtagtggaaaccggcatcccggtataactcgccaggccgatagacactgccgccgtcatctgggcagacatcccctgagcgtaggtcatgcctttcttaccgattttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagcgcgAc                                                                                                                                                                                                                                                                               >  1:6977‑M1/272‑273 (MQ=255)            aggccatcagaatgctggtcacggttttacgctgtaagccgccaccatctaccaccatcgtccccgcgacagaagaggagagtacgtgagtagtggaaaccggcatcccggtataactcgccaggccgatagacactgccgccgtcatctgggcagacatcccctgagcgtaggtcatgcctttcttaccgattttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagccccaccgcccagctgga                                                                                                                                                                                                                                                                   <  1:72367‑M1/14‑9 (MQ=255)                                 cggttttacgctgtaagccgccaccatctaccaccatcgtccccgcgacagaagaggagagtacgtgagtagtggaaaccggcatcccggtataactcgccaggccgatagacactgccgccgtcatctgggcagacatcccctgagcgtaggtcatgcctttcttaccgattttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagcgcgACCg                                                                                                                                                                                                                                                                             >  1:134046‑M1/240‑243 (MQ=255)                                        ttGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGCGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAACGCTACGa                                                                                                                                                                                                                                      >  2:188767/1‑275 (MQ=255)                                                                 cagGCTTCGTGGTGAACAGGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGc                                                                                                                                                                                                             <  2:79135/275‑1 (MQ=255)                                                                          tggtgAACATGAATGCACCTTGCTACGAAACTACCCGTACCCATGATGCCATCAACAACGTCGAATCTTACTTTGAGCAGCATCCTGCGCTGCTCAGACAGGCTACCGGTGCTGATCAGTTATTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATgcg                                                                                                                                                                                                     <  1:158331/274‑1 (MQ=255)                                                                                         ccACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCCACCGCCTGAACGGTATGTTGACCACCGATGTGGAAAGCTACAACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCtgtg                                                                                                                                                                                      >  1:183852/1‑274 (MQ=255)                                                                                             gtacgtgagtagtggaaaccgtcatcccggtataactcgccaggccgatagacactgccgccgtcatctgggcagacatcccctgagcgtaggtcatgcctttcttaccgattttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagcgcgACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGtt                                                                                                                                                                                  >  1:137546‑M1/180‑274 (MQ=255)                                                                                                               tacccgtGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTCCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGGGGAAAGTTGCGACAAGCTGTCGCTTGATCAACGTAGCCAGAGGCGCCGCATGATGCTGTGCGTGTATGACACTATCGACa                                                                                                                                                                  >  1:106274/1‑272 (MQ=255)                                                                                                                                                      gcagcaTCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGcc                                                                                                                        >  2:132354/1‑275 (MQ=255)                                                                                                                                                               ggcgcTGCTCAAACAGGCGACCGGGGCGGCTCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTgaaga                                                                                                               <  2:139418/274‑1 (MQ=255)                                                                                                                                                                ctgggcagacatcccctgagcgtaggtcatgcctttcttaccgattttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagcgcgACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTgaagaa                                                                                                              <  2:7438‑M1/163‑1 (MQ=255)                                                                                                                                                                                cTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGACTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATg                                                                                              >  1:192814/1‑275 (MQ=255)                                                                                                                                                                                         cTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCCGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCAcc                                                                                     >  1:121100/1‑275 (MQ=255)                                                                                                                                                                                           gATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCAt                                                                                   >  1:45474/1‑275 (MQ=255)                                                                                                                                                                                             tCAGTTAGGACCGGCTCCGGGAGCGGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATc                                                                                  <  2:183851/274‑1 (MQ=255)                                                                                                                                                                                              ctgttatgaCCGGCTACGGAAGCTGTCGCCACGCACACTGCGGAGGTCCACTGCCATCCGTAGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGCTCAACGTAGCCAGAGGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCAt                                                                                   <  1:75140/264‑1 (MQ=255)                                                                                                                                                                                                     tACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGC‑CCATCGAGTATGCa                                                                         <  1:132355/274‑1 (MQ=255)                                                                                                                                                                                                      aCCGGCTCCTGAAGCTGGCGAAACGCAACCTGCGGAGTTCCACTGCCATACGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTAGGTTGACCACCGATGTGGAAAGTGACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGGGCCGGATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCa                                                                         <  1:188768/274‑1 (MQ=255)                                                                                                                                                                                                      aCCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTg                                                                                                                                       >  1:227500/1‑212 (MQ=255)                                                                                                                                                                                                        cGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGCCGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGCGTATGCACCg                                                                      >  2:178388/1‑275 (MQ=255)                                                                                                                                                                                                          gCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGa                                                                                                                                   <  2:227499/212‑1 (MQ=255)                                                                                                                                                                                                              ttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagcgcgACCGc                                                                                                                                                                                                                                                                            <  1:113435‑M1/5‑1 (MQ=255)                                                                                                                                                                                                              ttctcaccgatagtcgttgccacacggcgccagccaatcatcgtaccgatacctaacgccagcgcgACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGtgtg                                                                 >  1:7438‑M1/67‑274 (MQ=255)                                                                                                                                                                                                                                                                            cTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGACTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTAGCGCTGGCGTCAGGTCACGGTAAGATGATTGGCTGGCGCAGTGGGGc  >  1:45603/1‑275 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                               GGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGC  >  NC_000913/3638317‑3638858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.