breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4285326 =NA (NA)4 (0.040) 4/510 NT 2.8% noncoding (25/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4285353 = 140 (1.310)noncoding (52/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3897605 =104 (0.950)4 (0.040) 3/506 NT 3.6% coding (100/468 nt) cbrB PRK09823 family inner membrane protein, creBC regulon
?NC_000913 3897624 = 111 (1.040)coding (119/468 nt) cbrB PRK09823 family inner membrane protein, creBC regulon
* ? NC_000913 = 3544651124 (1.130)3 (0.030) 3/504 NT 2.5% coding (194/771 nt) bioH pimeloyl‑ACP methyl ester carboxylesterase
?NC_000913 = 3544692 117 (1.100)coding (153/771 nt) bioH pimeloyl‑ACP methyl ester carboxylesterase
* ? NC_000913 2268434 =140 (1.280)3 (0.030) 3/506 NT 2.4% coding (606/987 nt) yeiR Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
?NC_000913 2268515 = 109 (1.020)coding (687/987 nt) yeiR Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
* ? NC_000913 = 1395088107 (0.980)3 (0.030) 3/508 NT 2.8% coding (835/1032 nt) ynaI mechanosensitive channel protein, very small conductance
?NC_000913 = 1395094 105 (0.980)coding (829/1032 nt) ynaI mechanosensitive channel protein, very small conductance
* ? NC_000913 = 137403588 (0.820)3 (0.030)
+TCT
3/506 NT 3.3% coding (814/882 nt) ycjO putative sugar ABC transporter permease
?NC_000913 1374036 = 89 (0.810)coding (815/882 nt) ycjO putative sugar ABC transporter permease
* ? NC_000913 1299175 =84 (0.770)4 (0.040) 4/522 NT 4.5% coding (578/648 nt) ychE UPF0056 family inner membrane protein
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region
* ? NC_000913 = 805887109 (0.990)3 (0.030) 3/508 NT 2.8% noncoding (84/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 805898 105 (0.980)noncoding (95/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 41725598 (0.890)5 (0.050) 4/522 NT 4.6% coding (114/690 nt) phoB response regulator in two‑component regulatory system with PhoR
?NC_000913 417273 = 108 (0.980)coding (132/690 nt) phoB response regulator in two‑component regulatory system with PhoR