mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP025533 | 2,084,509 | 0 | G | T | 47.8% | 90.3 / inf | 348 | intergenic (‑11/+190) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,084,510 | 0 | T | A | 47.8% | 51.8 / inf | 348 | intergenic (‑12/+189) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,420,717 | 0 | A | C | 47.8% | 406.1 / inf | 319 | G458G (GGA→GGC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,086,244 | 0 | T | G | 47.7% | 43.6 / inf | 332 | G2G (GGA→GGC) | CYL77_09950 | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| * | CP025533 | 2,084,508 | 0 | G | T | 47.7% | 93.6 / inf | 348 | intergenic (‑10/+191) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,420,710 | 0 | C | T | 46.6% | 358.3 / inf | 310 | A456V (GCT→GTT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,708 | 0 | T | C | 46.3% | 372.8 / inf | 311 | P455P (CCT→CCC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,723 | 0 | G | A | 46.1% | 366.6 / inf | 308 | V460V (GTG→GTA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,726 | 0 | G | T | 45.8% | 450.3 / inf | 308 | G461G (GGG→GGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,733 | 0 | C | T | 44.4% | 381.4 / inf | 306 | P464S (CCA→TCA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,737 | 0 | T | C | 43.6% | 399.4 / inf | 293 | V465A (GTG→GCG) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,738 | 0 | G | A | 43.3% | 418.6 / inf | 293 | V465V (GTG→GTA) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,739 | 0 | G | A | 43.3% | 413.3 / inf | 293 | G466S (GGT→AGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 985,647 | 0 | A | C | 38.7% | 379.9 / inf | 225 | P272P (CCA→CCC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 2,420,781 | 0 | A | C | 37.6% | 556.2 / inf | 271 | S480R (AGT→CGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,810 | 0 | A | G | 37.5% | 489.8 / inf | 268 | K489K (AAA→AAG) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,828 | 0 | C | G | 37.4% | 566.8 / inf | 270 | P495P (CCC→CCG) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,786 | 0 | G | C | 36.8% | 605.8 / inf | 273 | S481S (TCG→TCC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 985,671 | 0 | A | C | 34.0% | 473.6 / inf | 241 | R280R (CGA→CGC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 985,522 | 0 | T | G | 28.6% | 379.7 / 216.0 | 199 | S231A (TCA→GCA) | CYL77_04730 | HNH endonuclease |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP025533 | = 497710 | 175 (1.010) | 13 (0.110) | 12/346 | 17.7 | 10.4% | intergenic (+2/‑251) | CYL77_02460/CYL77_02465 | tRNA‑Thr/tRNA‑Thr |
| ? | CP025533 | 498036 = | 101 (0.840) | intergenic (+3/‑36) | CYL77_02465/CYL77_02470 | tRNA‑Thr/tRNA‑Met | |||||
| * | ? | CP025533 | = 1777474 | 140 (0.810) | 3 (0.030) | 3/342 | 25.2 | 2.9% | intergenic (‑3/+31) | CYL77_08470/CYL77_08475 | tRNA‑Gly/tRNA‑Val |
| ? | CP025533 | 1777992 = | 107 (0.900) | intergenic (‑4/‑344) | CYL77_08495/CYL77_08500 | tRNA‑Gly/tRNA‑Val | |||||