New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP025533	2631258 =	NA (NA)	9 (0.060)	8/496	24.7	5.0%	coding (233/249 nt)	CYL77_12470	hypothetical protein
	?	CP025533	= 2734035	170 (1.090)					intergenic (‑234/+267)	CYL77_12995/CYL77_13000	succinyl‑CoA ligase subunit beta/tRNA‑Asp
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGGCCGAATAAGGAACTCGCGCAGTTGGGTCGTAGTTTGTTTAAACGACTTGGTGATGTGTTGGCGTATTTCGATGTTGGTGTCTCCAACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP025533/2631496‑2631258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCACGGATCCAATTTTGTTGCAATTTGCAAAGTTTACAGTGTTAGACTTCACAATACGATCATATTGGTGAGTTGAAACACTTACTTTTACGGGAAGACTTTGTTAAAGACGCAGA  <  CP025533/2734035‑2733836                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGGGCCGAATAAGGAACTCGCGCAGTTGGGTCGTAGTTTGTTTAAACGACTTGGTGATGTGTTGGCGTATTTCGATGTTGGTGTCTCCAACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCT                                                                                                                                                                                                >  2:717229/1‑249                          TTGGGTCGTAGTTTGTTTAAACGACTTGGTGATGTGTTGGCGTATTTCGATGTTGGTGTCTCCAACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCTCACGGATGTCATGTTTTGACCGGCT                                                                                                                                                                       <  1:393625/249‑1                                                                GGCGTATTTCGATGTTGGTGTCTCCAACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTG                                                                                                                                 >  2:747328/1‑249                                                                               TGGTGTCTCCAACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCAC                                                                                                                  <  2:1482162/249‑1                                                                               TGGTGTCTCCAACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCAC                                                                                                                  <  2:712402/249‑1                                                                                          ACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCACGGATCCAATTT                                                                                                       <  2:548692/249‑1                                                                                                                                                       CCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCACGGATCCAATTTTGTTGCAATTTGCAAAGTTTACAGTGTTAGACTTCACAATACGATCATATTGGTGAGTTGA                                          >  2:995478/1‑249                                                                                                                                                                       nACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCCGGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCACGGATCCAATTTTGTTGCAATTTGCAAAGTTTACAGTGTTAGACTTCACAATACGATCATATTGGTGAGTTGAAACACTTACTTTTACG                          <  1:374831/248‑1                                                                                                                                                                                               TCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGGGCCGGTTAAGACTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCACGGATCCAATTTTGTTGCAATTTGCAAAGTTTACAGTGTTAGACTTCACAATACGATCATATTGGTGAGTTGAAACACTTACTTTTACGGGAAGACTTTGTTAAAGACGCAGA  <  2:615583/249‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGGGCCGAATAAGGAACTCGCGCAGTTGGGTCGTAGTTTGTTTAAACGACTTGGTGATGTGTTGGCGTATTTCGATGTTGGTGTCTCCAACGGTCCGGTCGAAGCGATCAACGGACGGTTGGAGCATTTGCGTGGGATTGCTCTAGGTTTCCGTAATTTGAACCACTACATTCTGCGGTGCCTTATCCATTCAGGGCAGTTGGTCCATAAGATCAATGCACTCTAAAACAGGAAGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP025533/2631496‑2631258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTAAGCCTCACGGATGTCATGTTTTGACCGGCTAGTTGCCGGAAAACCTGCGGAAAAGTTCCCAAGGGGTGGGGGCTGAGCACCACGGATCCAATTTTGTTGCAATTTGCAAAGTTTACAGTGTTAGACTTCACAATACGATCATATTGGTGAGTTGAAACACTTACTTTTACGGGAAGACTTTGTTAAAGACGCAGA  <  CP025533/2734035‑2733836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.