New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP025533 | 2728535 = | 110 (0.700) | 29 (0.190) | 29/496 | 13.4 | 20.9% | coding (277/297 nt) | CYL77_12960 | hypothetical protein |
? | CP025533 | = 3041097 | NA (NA) | intergenic (+7/‑308) | CYL77_14395/CYL77_14400 | IS30 family transposase ISCg2/YibE/F family protein | |||||
Rejected: Coverage evenness skew score above cutoff. |
AATACCGCAAATGGGGGTAGCGGGTGTGTTGAGGGGTGGCTGACCGGACAGGGATTTGAGTTTTTCTCTAAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP025533/2728778‑2728535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCGGACACT < CP025533/3041097‑3040858 AATACCGCAAATGGGGGTAGCGGGTGTGTTGAGGGGTGGCTGACCGGACAGGGATTTGAGTTTTTCTCTAAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGA > 1:1344548/1‑249 GGGGGTAGCGGGTGTGTTGGGGGTGGGCTGACGGGACAGGGTTTTGAGTTTTTCTCTAAAACC‑GGCGGGAATTGGGGGTTAACTACCTCTTCGGGGGTGGTGGGGGGGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTG < 2:1246158/249‑1 ggaggGGGTGTGTGGGGGGTTGGTTGACCGAACGGGAATTTGAGTTTTTCT‑TAAAACCGGGCGTGACCTGGGGTTTAACTACCTTTTGGGGGGTGGTGGGGGGGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATG < 1:672835/244‑1 AGCGGGTGTGTTGAGGGGTGGCTGACCGGACAGGGATTTGAGTTTTTCTCTAAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTCGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCA > 2:1215925/1‑249 AGGGGTGGCTGACCGGACAGGGATATGAGTTTTTCTCTAAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGACGAATTCAATCGGTAGATGCACCAACTACGATTT > 2:510451/1‑249 GGTGGCTGACCGGACAGGGATTTGAGTTTTTCTCTAAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGG‑‑‑‑‑‑‑GGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATAC > 1:2089/1‑249 gagtttgtcctgAAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGGGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTA < 2:1336507/237‑1 TCTCAAAACCC‑GGCGTGAACTGGGGGTTAACTACCTCTTGGGGGTGGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCAT < 1:1476418/249‑1 nCTAAAACG‑GGCTGAAACTGGGGTTTAACTCCCTCTTCGGGGGTGGTTGGGGGGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGC < 1:619006/248‑1 AAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATT > 1:166707/1‑249 C‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCG > 1:528145/1‑249 GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGC > 2:1310487/1‑249 CGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCGAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGG > 1:782669/1‑249 CTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGAT < 2:448673/249‑1 GGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACT < 2:483643/249‑1 GTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACT > 1:185045/1‑249 GTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGT < 2:777233/249‑1 TAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAA < 1:1215925/249‑1 TAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAA > 2:963999/1‑249 ACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCC > 1:88723/1‑249 AAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCAT > 1:23006/1‑249 ACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCA > 2:165244/1‑249 CCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCG < 2:297721/249‑1 ACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGC > 1:1244974/1‑249 CGCCTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATG > 2:501811/1‑249 CTCGACTATGTTCACCCCCAAAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGG < 2:774134/249‑1 CCAAAGGGGAAGTACGGCGAATTCAAGCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCG < 2:57359/249‑1 AAGGGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCGGAC > 2:222978/1‑249 GGGAAGTACGGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCGGACACT > 1:474077/1‑249 AATACCGCAAATGGGGGTAGCGGGTGTGTTGAGGGGTGGCTGACCGGACAGGGATTTGAGTTTTTCTCTAAAACC‑GGCGTGAACTGGGGGTTAACTACCTCTTCGGGGGTGGTTGGGGTGGCGGGGGTGGCCCTTGAGGGGTGGGGAACTTATTTAAATACCCCCGAAAAACAAGGCAAATGGACACCCGTGCCAACATATTGGCGATCCGCCTCGACTATGTTCACCCCCAAAGGGGAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP025533/2728778‑2728535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGAATTCAATCGGTGGATGCACCAACTACGATTTTTTCATATACCTGCGTCGCGCTTTTAAAACCATGCATTTTCCGCGGCCGGTAATTCAGCAGATCCTGTGCCCGCTGAACTTCTTCGTCACTTACTTTAGCAAAATTAGTGCCCTTCGGGAAAAAATCCCTGACCAATCCATTCGTATTCTCATTCGACCCACGCTGCCACGGCGAATGAGGATCACAGAAAAACACCGGACACT < CP025533/3041097‑3040858 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |