New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP025533	2921785 =	116 (0.740)	23 (0.150)	23/496	15.9	16.6%	coding (813/1671 nt)	CYL77_13825	Na+/H+ antiporter subunit D
	?	CP025533	3039462 =	NA (NA)					intergenic (+256/‑423)	CYL77_14390/CYL77_14395	pyridoxal phosphate‑dependent aminotransferase/IS30 family transposase ISCg2
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCTTGGCGTTCCACCAGACCGACCACCAGGAACAGGGAAGTCTGAACCAGAATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP025533/2922031‑2921785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTGGCAATGCTTTTGACACCGC  >  CP025533/3039462‑3039697                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGCTTGGCGTTCCACCAGACCGACCACCAGGAACAGGGAAGTCTGAACCAGAATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGG                                                                                                                                                                                                                                            <  1:29546/249‑1                 AGACCGACCACCAGGAACAGGGAAGTCTGAACCAGAATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGA                                                                                                                                                                                                                            >  2:1420754/1‑249                                                 CAGAATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGT                                                                                                                                                                                            <  2:246049/249‑1                                                 CAGAATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGT                                                                                                                                                                                            >  1:944077/1‑249                                                   GAATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGG                                                                                                                                                                                          >  2:1147812/1‑249                                                    AATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGG                                                                                                                                                                                         <  2:1231640/249‑1                                                                    TAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATC                                                                                                                                                                         <  2:492706/249‑1                                                                                  AGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCG                                                                                                                                                           <  1:1026997/249‑1                                                                                                CAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCG                                                                                                                                             <  1:607838/249‑1                                                                                                     CCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGGCAGCGCGCCCAAAATACCAATGAGCATGGGGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGTCGTACGGCTTTCCTCGACATG                                                                                                                                        <  2:1486946/249‑1                                                                                                                    AAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATG                                                                                                                         <  2:1459631/249‑1                                                                                                                             TAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTT                                                                                                                <  1:661220/249‑1                                                                                                                                   ATGTGGATGACCAGAGTAAATGAAAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCG                                                                                                          <  1:370965/249‑1                                                                                                                                         CTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACA                                                                                                    <  2:1416245/249‑1                                                                                                                                                              AAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTC                                                                               >  1:1450476/1‑249                                                                                                                                                                 CGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACC                                                                            <  2:707597/249‑1                                                                                                                                                                    TTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGG                                                                         >  2:1443936/1‑249                                                                                                                                                                              TTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGG                                                               <  1:285390/249‑1                                                                                                                                                                                              CAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCGAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGT                                               >  2:381398/1‑249                                                                                                                                                                                                           AGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGC                                  <  2:944077/249‑1                                                                                                                                                                                                                   GGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCG                          >  1:541053/1‑249                                                                                                                                                                                                                                          TGGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTGGCAATGCTTTTGACACCG   <  2:1044198/249‑1                                                                                                                                                                                                                                           GGTGTCAAGGGATGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTGGCAATGCTTTTGAAACCGC  >  2:831661/1‑249                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGCTTGGCGTTCCACCAGACCGACCACCAGGAACAGGGAAGTCTGAACCAGAATGTGGTGGATTGCGTAGAAGATCGCACCAGACAAACCCTGTGCAGATCCAAGGGCTACGCCGAAGATCATGTAGCCGATGTGGCTGACCAGAGTAAATGACAACAAACGTTTGATATCGTTTTGCGCCATCGCGCCCAAAATACCAATGAGCATGGTGGCGAGTGCCACCCACATCAGCATGGTGTCAAGGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP025533/2922031‑2921785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTGGCAATGCTTTTGACACCGC  >  CP025533/3039462‑3039697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.