New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP025533	= 2921787	118 (0.750)	25 (0.160)	25/496	15.0	17.5%	coding (815/1671 nt)	CYL77_13825	Na+/H+ antiporter subunit D
	?	CP025533	3039462 =	NA (NA)					intergenic (+256/‑423)	CYL77_14390/CYL77_14395	pyridoxal phosphate‑dependent aminotransferase/IS30 family transposase ISCg2
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGGCTCACGTTGGCCTACGCATGGAAGATGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP025533/2921552‑2921787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTGGCAATGCTTTTGACACCGCC  >  CP025533/3039462‑3039698                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGGCTCACGTTGGCCTACGCATGGAAGATGTTCCGTCTGGAACTCGCTCCGCGACCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGCTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGGGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGgttgggg                                                                                                                                                                                                                                  >  1:1056924/1‑242              GCCTACGCATGGAAGATGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCA                                                                                                                                                                                                                     >  2:729109/1‑249                  ACGCATGGAAGATGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAG                                                                                                                                                                                                                 <  1:836440/249‑1                            GATGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAG                                                                                                                                                                                                       <  2:1241559/249‑1                             ATGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGG                                                                                                                                                                                                      >  1:829646/1‑249                             ATGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGG                                                                                                                                                                                                      <  1:1410537/249‑1                              TGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGG                                                                                                                                                                                                     <  1:1130583/249‑1                                      CTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGT                                                                                                                                                                                             >  1:1062629/1‑249                                             nCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATT                                                                                                                                                                                      <  1:729109/248‑1                                              CGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTC                                                                                                                                                                                     >  2:812697/1‑249                                                             GCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCnn                                                                                                                                                                      >  1:268182/1‑247                                                                       nCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCG                                                                                                                                                            <  2:1304582/248‑1                                                                                 CGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTC                                                                                                                                                  >  1:258742/1‑249                                                                                            CTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGAT                                                                                                                                       <  1:297365/249‑1                                                                                                     TCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGG                                                                                                                              >  1:1017860/1‑249                                                                                                                  CTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCTCCACGAGCAAGCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATTANACGATGTATGTCAGGTCTT                                                                                                                 >  2:1287492/1‑249                                                                                                                                       CACCGCTCCATCTCTGGTCACCGCGGTGTTCGCAGGTCTGTTCACCAAGGTGGGCTTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCTGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGTACAATCCCAGAGGAAAGCCGTACTGCTTTCCTCGACATGATCAATCAAGGTATGTCAGTTCTTGCTGCGTCTACAGCGGTCGGG                                                                                            <  2:165339/249‑1                                                                                                                                                               GGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCCTTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATTTCAGGTCTTGCTGCGTCTACCGCGGCCAGGGTCAGGGAAATCACCGGGCGgatg                                                                    >  2:741457/1‑245                                                                                                                                                                                          GGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTG                                         >  1:112844/1‑249                                                                                                                                                                                                   TTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGC                                <  1:706367/249‑1                                                                                                                                                                                                      CATCATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCG                             >  2:438596/1‑249                                                                                                                                                                                                          ATTCGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATTAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCCGGCGAAAGTGGGCGTAGGCCGGCGGTGTGAAACTGACCCGCGGCCCCCGAG                         >  2:608979/1‑249                                                                                                                                                                                                             CGAGCACGCTCGATTATTTTCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTG                      <  2:1291758/249‑1                                                                                                                                                                                                                                TCACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTGGCAATGCTTTTGACACCGC   >  2:739577/1‑249                                                                                                                                                                                                                                 CACCGATGGATCGGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCACGCGAGGTGGCAATGCTTTTGACACCGCC  >  1:432649/1‑249                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGGCTCACGTTGGCCTACGCATGGAAGATGTTCCGTCTGGAACTCGCTCCGCGATCTTCGCAGTGTTGCTCGTGGCATTCGGTATTAAAGCTGCCGTGTTCCCCCTAGATTCCTGGCTGCCGGACTCCTACCCCACCGCGCCATCGCTGGTCACCGCGGTGTTCGCAGGTCTGTTGACCAAGGTGGGTGTGTATTCCATCATTCGAGCACGCTCGATTATTTTCACCGATGGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP025533/2921552‑2921787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGGTTCAGGGGGTGAATGCACCACGAGCAACCCGAAGGGTGCGAAGTGGGCATTCGTAGAACAATCCCAGAGGAAAGCCGTACGGCTTTCCTCGACATGATCAATCAAGGTATGTCAGGTCTTGCTGCGTCTACAGCGGTCGGGGTCAGTGAATTCACCGGGCGAAAGTGGGCGAAGGCCGCCGGGGTGAAACTGACCCGCGGCCCGCGAGGTGGCAATGCTTTTGACACCGCC  >  CP025533/3039462‑3039698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.