| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 3,972,182 | 1 | . | C | 97.6% | 151.0 / ‑3.2 | 41 | intergenic (‑134/‑397) | h16_A3682/h16_A3683 | putative methyltransferase/Hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (19/21); total (19/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
TTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑G‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATT > AM260479/3972055‑3972295 | ttCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑G‑ccctgg > 1:236651/1‑130 (MQ=255) cGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTg < 2:236651/134‑1 (MQ=255) cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGAt < 1:827549/134‑1 (MQ=255) gtcgCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTg < 1:396913/133‑1 (MQ=255) tttGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGtat < 2:252880/133‑1 (MQ=255) ccggccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAg > 2:766947/1‑134 (MQ=255) gccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcg < 2:160234/134‑1 (MQ=255) gcgcGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGAt < 2:508587/89‑1 (MQ=255) gcgcGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGAt > 1:508587/1‑89 (MQ=255) gcgcGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCg > 1:1135662/1‑134 (MQ=255) ggATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑G‑ccctg < 2:426544/71‑4 (MQ=255) ggATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑G‑ccctg > 1:426544/1‑68 (MQ=255) gTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACTC‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt < 2:71198/134‑1 (MQ=255) gTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt < 2:85986/134‑1 (MQ=255) cacGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCg < 2:759092/134‑1 (MQ=255) cGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACtgtg > 1:256678/1‑133 (MQ=255) gTAACACCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGa > 1:664927/1‑134 (MQ=255) cacCCCTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAg < 1:766947/134‑1 (MQ=255) ccccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGAt < 2:190532/41‑1 (MQ=255) ccccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGAt > 1:190532/1‑41 (MQ=255) ccccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg < 1:268907/79‑1 (MQ=255) ccccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg > 2:268907/1‑79 (MQ=255) ccccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGcc < 2:64771/84‑1 (MQ=255) ccccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGcc > 1:64771/1‑84 (MQ=255) ccccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCa > 1:288217/1‑134 (MQ=255) ccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGAt < 2:558687/39‑1 (MQ=255) ccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGAt > 1:558687/1‑39 (MQ=255) ccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg > 2:1116049/1‑90 (MQ=255) ccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg < 1:1116049/90‑1 (MQ=255) ccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcccc > 2:185602/1‑95 (MQ=255) ccTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcccc < 1:185602/95‑1 (MQ=255) cTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg > 2:1102067/1‑76 (MQ=255) cTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg < 1:1102067/76‑1 (MQ=255) cTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGc < 2:123088/112‑1 (MQ=255) cTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGc > 1:123088/1‑112 (MQ=255) cTTTCCGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcgc > 1:463887/1‑134 (MQ=255) cGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCAccc > 2:146602/1‑52 (MQ=255) cGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCAccc < 1:146602/52‑1 (MQ=255) cGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTTGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAtt > 1:282273/1‑134 (MQ=255) cGGCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAt < 2:463887/133‑1 (MQ=255) ggCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACg > 1:424402/1‑45 (MQ=255) ggCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACg < 2:424402/45‑1 (MQ=255) ggCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcgc < 2:1003549/128‑1 (MQ=255) ggCGACCTCACCGTATAC‑GCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcgc > 1:1003549/1‑128 (MQ=255) | TTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATAC‑G‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATT > AM260479/3972055‑3972295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |