| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 2,111,022 | 1 | . | G | 92.3% | 40.5 / ‑3.1 | 13 | coding (562/1089 nt) | h16_A1942 | Hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (4/8); total (5/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGACCGATCGCCAGCATGATTCCTCTTCCACAAGCGCAGTTGATCGGGCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGAT‑GACTCGACG‑A‑GATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATGGTGCTCCGCCGCGCCCTCCCCTCGGTCGCGCGCGCCGCGCCCGCCGTGCGTCGCGCCGCGGTGCGCGGCGTGGCCCAGGCGG > AM260479/2110890‑2111143 | ggACCGATCGCCAGCATGATTCCTCTTCCACAAGCGCAGTTGATCGGGCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTcgacg‑a < 2:442531/134‑1 (MQ=255) aTCGCCAGCATGATTCCTCTTCCACAAGCGCAGTTGATCGGGCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACg‑a‑ggatgc > 2:194416/1‑129 (MQ=255) aaGCGCAGTTGATCGGGCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTg < 1:376689/134‑1 (MQ=255) cgcAGTTGATCGGGCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGACGCcgccgcg < 1:291255/122‑1 (MQ=255) cgcAGTTGATCGGGCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGACGCcgccgcg > 2:291255/1‑122 (MQ=255) gggCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATGGTGc < 2:295076/133‑1 (MQ=255) gcgcATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACGAA‑GATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATCGCACTCCGCCCCGCCCCCCCCTCGGTcg > 2:758152/1‑134 (MQ=255) gCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATGGTGCTCCGCCGCGCCCTCCCCTCGGTCGCGcgcgcc < 1:419459/132‑1 (MQ=255) aCGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGAcg < 1:110601/66‑1 (MQ=255) aCGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGAcg > 2:110601/1‑66 (MQ=255) aCGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCAt > 1:391197/1‑91 (MQ=255) aCGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGATGGACTCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCAt < 2:391197/91‑1 (MQ=255) tggACTCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATGGTGCTCCGCCGCGCCCTCCCCTCGGTCGCGCGCGCCGCGCCCGCCGTGCGTCGCGCCGCGGTGCGCGGCGTGGCCCAGGCgg < 1:194416/132‑1 (MQ=255) tCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATGGTGCTCCGCCGCGCCCTCCCCTCGGTCGCGCGCGCCGCGCccgccg < 1:511998/93‑1 (MQ=255) tCGACG‑AGGATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATGGTGCTCCGCCGCGCCCTCCCCTCGGTCGCGCGCGCCGCGCccgccg > 2:511998/1‑93 (MQ=255) | GGACCGATCGCCAGCATGATTCCTCTTCCACAAGCGCAGTTGATCGGGCGCATCGCCAATGTGGCCGGGCGCATGCTCGCCGACGGCGCCGACGAGTATGAGACCTTCGACGAACTGGTGGAT‑GACTCGACG‑A‑GATGCGATCGACGCCGCCGCGCCGGTGCTGGCCGGCATGGTGCTCCGCCGCGCCCTCCCCTCGGTCGCGCGCGCCGCGCCCGCCGTGCGTCGCGCCGCGGTGCGCGGCGTGGCCCAGGCGG > AM260479/2110890‑2111143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |