| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 3,376,159 | (CGGTGGCGCTCG)2→1 | coding (378‑389/1146 nt) | phcR ← | signal transduction histidine kinase containing a receiver domain (hybrid) |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 3376140 | 3376151 | 12 | 21 [0] | [0] 25 | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3376152 = | 0 (0.000) | 19 (0.940) | 15/178 | 0.3 | 100% | coding (396/1146 nt) | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) |
| ? | AM260479 | = 3376139 | 0 (0.000) | coding (409/1146 nt) | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) | |||||
CTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3376281‑3376152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgccaccgcgagcgcACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCACGGCATCCGCGGACGTGTC < AM260479/3376139‑3376023 CTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCC > 1:666884/1‑134 TATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCT > 2:847487/1‑134 TGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC < 2:893984/127‑1 TGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC > 1:893984/1‑127 CGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCC < 1:847487/134‑1 TGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCT > 1:429257/1‑133 GAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTT > 1:585901/1‑134 AGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC > 1:324408/1‑85 AGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC < 2:324408/85‑1 GTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCT > 1:196065/1‑134 TCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTG < 2:119746/134‑1 TCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTG < 2:934368/134‑1 TCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTG < 1:865421/134‑1 GAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAA > 2:510354/1‑134 GAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCC < 1:882774/79‑1 GAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCC > 2:882774/1‑79 TGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCG < 1:144782/54‑1 TGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCG > 2:144782/1‑54 AGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGAT > 2:724271/1‑80 AGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGAT < 1:724271/80‑1 CGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTG > 2:722383/1‑134 GCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCA < 2:516754/133‑1 AGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGC > 2:762209/1‑91 AGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGC < 1:762209/91‑1 GCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCTTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCACGGCATCCGCGGACG > 2:945419/1‑134 GAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCACGGCATCCGCGGACGTGT < 1:510354/134‑1 AGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCACGGCATCCGCGGACGTGTC < 2:585901/134‑1 CTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3376281‑3376152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgccaccgcgagcgcACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCACGGCATCCGCGGACGTGTC < AM260479/3376139‑3376023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |