New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3812807 =	13 (0.530)	3 (0.130)	3/200	2.0	25.0%	coding (479/810 nt)	gspN	general secretion pathway protein N
	?	AM260479	3812825 =	6 (0.260)					coding (497/810 nt)	gspN	general secretion pathway protein N

ACGGCCGACGACACCTGTTCGATGCGCAGCGTCATATGGCCGCTCATGCCCTGACCCGAAAAGCGGCCCTGCAGCGTGGACCAGTCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3812897‑3812807 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccacgcTGCAGGGCCGCTTTTCGGGTCAGGGCATGAGCGGCCATATGACGCTGCGCATCGAAC  >  AM260479/3812825‑3812881                                                                                                                                                      ACGGCCGACGACACCTGTTCGATGCGCAGCGTCATATGGCCGCTCATGCCCTGACCCGAAAAGCGGCCCTGCAGCGTGGACCAGTCCACGCTGCAGGGCCGCTTTTCGGGTCAGGGCATGAGCGGCCATATGA                 <  2:112409/133‑1                      ATGCGCAGCGTCATATGGCCGCTCATGCCCTGACCCGAAAAGCGGCCCTGCAGCGTGGACCAGTCCACGCTGCAGGGCCGCTTTTCGGGTCAGGGCATGA                             <  1:657445/100‑1                      ATGCGCAGCGTCATATGGCCGCTCATGCCCTGACCCGAAAAGCGGCCCTGCAGCGTGGACCAGTCCACGCTGCAGGGCCGCTTTTCGGGTCAGGGCATGA                             >  2:657445/1‑100                                                                                      CCACGCTGCAGGGCCGCTTTTCGGGTCAGGGCATGAGCGGCCATATGACGCTGCGCATCGAAC  <  1:413532/63‑1                                                                                      CCACGCTGCAGGGCCGCTTTTCGGGTCAGGGCATGAGCGGCCATATGACGCTGCGCATCGAAC  >  2:413532/1‑63                                                                                                                                                      ACGGCCGACGACACCTGTTCGATGCGCAGCGTCATATGGCCGCTCATGCCCTGACCCGAAAAGCGGCCCTGCAGCGTGGACCAGTCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3812897‑3812807 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccacgcTGCAGGGCCGCTTTTCGGGTCAGGGCATGAGCGGCCATATGACGCTGCGCATCGAAC  >  AM260479/3812825‑3812881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.