New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 267001	16 (0.480)	4 (0.130) +TGCATCTCCTGC	4/192	2.3	21.4%	coding (861/966 nt)	motB	Chemotaxis protein
	?	AM260480	267062 =	17 (0.510)					coding (922/966 nt)	motB	Chemotaxis protein

CGACCATGCCGCTGGACAAGGAAGACCTGCTGGCGCCGGTGAACCGGCGCATCAGCATCGTGGTGCTCAACCACAAGGCCCAGGCGCGCTTCGAGGCCGAGAACGCCAGCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/266886‑267001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGCCTCAGCGCCCGCGGCTGCGCCCACGGGCAG  >  AM260480/267062‑267096                                                                                                                     ||||||||||||                                    CGACCATGCCGCTGGACAAGGAAGACCTGCTGGCGCCGGTGAACCGGCGCATCAGCATCGTGGTGCTCAACCACAAGGCCCAGGCGCGCTTCGAGGCCGAGAACGCCAGCCCTGCCTGCATCTCCTGCGCGGC                                >  1:235380/1‑133 CGACCATGCCGCTGGACAAGGAAGACCTGCTGGCGCCGGTGAACCGGCGCATCAGCATCGTGGTGCTCAACCACAAGGCCCAGGCGCGCTTCGAGGCCGAGAACGCCAGCCCTGCCTGCATCTCCTGCGCGGC                                <  2:235380/133‑1                             GCTGGCGCCGGTGAACCGGCGCATCAGCATCGTGGTGCTCAACCACAAGGCCCAGGCGCGCTTCGAGGCCGAGAACGCCAGCCCTGCCTGCATCTCCTGCGCGGCCTCAGCGCCCGCGGCTGCGCCCACGGG     >  2:85393/1‑132                              CTGGCGCCGGTGAACCGGCGCATCAGCATCGTGGTGCTCAACCACAAGGCCCAGGCGCGCTTCGAGGCCGAGAACGCCAGCCCTGCCTGCATCTCCTGCGCGGCCTCAGCGCCCGCGGCTGCGCCCACGGGCAG  <  1:85393/134‑1                                                                                                                     ||||||||||||                                    CGACCATGCCGCTGGACAAGGAAGACCTGCTGGCGCCGGTGAACCGGCGCATCAGCATCGTGGTGCTCAACCACAAGGCCCAGGCGCGCTTCGAGGCCGAGAACGCCAGCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/266886‑267001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGCCTCAGCGCCCGCGGCTGCGCCCACGGGCAG  >  AM260480/267062‑267096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.