| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2103317 = | 16 (0.480) | 6 (0.190) | 6/204 | 1.9 | 27.8% | coding (986/1368 nt) | czcC2 | Cobalt‑zinc‑cadmium resistance outer membrane porin |
| ? | AM260480 | 2103340 = | 16 (0.500) | coding (963/1368 nt) | czcC2 | Cobalt‑zinc‑cadmium resistance outer membrane porin | |||||
CAGCTGGGCGTGAACTACCAGAAGTCGCTGCGCTGGCCCGAGGTGGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2103453‑2103317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggGATGGTCAGGACCAGCCCGATCTGCGAGACGTTGTTGTCAGGCTGG > AM260480/2103340‑2103385 CAGCTGGGCGTGAACTACCAGAAGTCGCTGCGCTGGCCCGAGGTGGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAG > 1:180580/1‑134CAGCTGGGCGTGAACTACCAGAAGTCGCTGCGCTGGCCCGAGGTGGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAG > 2:563740/1‑134 CTGGGCGTGAACTACCAGAAGTCGCTGCGCTGGCCCGAGGTGGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAGCGG < 1:629428/134‑1 GCTGGCCCGAGGTGGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAGCGGGA > 1:575114/1‑108 GCTGGCCCGAGGTGGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAGCGGGA < 2:575114/108‑1 GGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAGCGGGATGGTC > 1:684315/1‑100 GGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAGCGGGATGGTC < 2:684315/100‑1 GACCATCCCGCTGTGGGACCGCCGCAGCGGGATGGTCAGGACCAGCCCGATCTGCGAGACGTTGTTGTCAGGCTGG < 1:9223/76‑1 GACCATCCCGCTGTGGGACCGCCGCAGCGGGATGGTCAGGACCAGCCCGATCTGCGAGACGTTGTTGTCAGGCTGG > 2:9223/1‑76 CAGCTGGGCGTGAACTACCAGAAGTCGCTGCGCTGGCCCGAGGTGGCGGTGCGCGCCAGCACCGACCGCCAGCCTGACAACAACGTCTCGCAGATCGGGCTGGTCCTGACCATCCCGCTGTGGGACCGCCGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2103453‑2103317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggGATGGTCAGGACCAGCCCGATCTGCGAGACGTTGTTGTCAGGCTGG > AM260480/2103340‑2103385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |