Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AY305378	46135	46903	769	2 [0]	[0] 3	[PHG050]–PHG051	[PHG050],PHG051

CGCCAATACGCGCAAGAGAGAAAAAATGGACATCAGCCAGAGCCCTGCAAATACTAGAATCAGCAGACTACCGGGTGTCCATAGAGTCAGCAGAAAAAAATGGACACAACGACCGTCAGAATGTCCATTTCCAG  >  AY305378/46904‑47037 |                                                                                                                                      cgccAATACGCGCAAGAGAGAAAAAATGGACATCAGCCAGAGCCCTGCAAATACTAGAATCAGCAGa                                                                     >  1:834822/1‑67 (MQ=255) cgccAATACGCGCAAGAGAGAAAAAATGGACATCAGCCAGAGCCCTGCAAATACTAGAATCAGCAGa                                                                     <  2:834822/67‑1 (MQ=255) cgccAATACGCGCAAGAGAGAAAAAATGGACATCAGCCAGAGCCCTGCAAATACTAGAATCAGCAGACTACCGGGTGTCCATAGAGTCAGCAGAAAAAAATGGACACAACGACCGTCAGAATGTCCATTTCCAg  >  2:300162/1‑134 (MQ=255) |                                                                                                                                      CGCCAATACGCGCAAGAGAGAAAAAATGGACATCAGCCAGAGCCCTGCAAATACTAGAATCAGCAGACTACCGGGTGTCCATAGAGTCAGCAGAAAAAAATGGACACAACGACCGTCAGAATGTCCATTTCCAG  >  AY305378/46904‑47037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑