New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3607428	14 (0.530)	4 (0.180)	4/172	1.7	27.1%	coding (415/1296 nt)	h16_A3332	FAD‑binding Monooxygenase
	?	AM260479	= 3607410	10 (0.460)					coding (433/1296 nt)	h16_A3332	FAD‑binding Monooxygenase

CAGGGTCAGCGTGACGCCGTCAGGATCGCGCTCGAACGCGCTCGCCGTGGCGTCGTGCCAGGTCACCTGGTGCTGGAAGCCCAGCGCTGTGTCGAGCGCGCGCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3607321‑3607428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgagcgcgcgctcgacACAGCGCTGGGCTTCCAGCACCAGGTGACCTGGCACGACGCCACGGCGAGCGCGTTCGAGCGCGATCCTGACGGCGTCACGCTGACCCTG  <  AM260479/3607410‑3607321                                                                                                                                                                                                        CAGGGTCAGCGTGACGCCGTCAGGATCGCGCTCGAACGCGCTCGCCGTGGCGTCGTGCCAGGTCACCTGGTGCTGGAAGCCCAGCGCTGTGTCG                                                                                                          <  1:601899/94‑1             GACGCCGTCAGGATCGCGCTCGAACGCGCTCGCCGTGGCGTCGTGCCAGGTCACCTGGTGCTGGAAGCCCAGCGCTGTGTCGAGCGCGCGCTCGACACAGCG                                                                                      <  2:9974/102‑1                  CGTCAGGATCGCGCTCGAACGCGCTCGCCGTGGCGTCGTGCCAGGTCACCTGGTGCTGGAAGCCCAGCGCTGTGTCGAGCGCGCGCTCGACACAGCGCTGGGCTTCCAGCACCAGGTGACCTGG                                                           <  1:43974/124‑1                                                          CCAGGTCACCTGGTGCTGGAAGCCCAGCGCTGTGTCGAGCGCGCGCTCGACACAGCGCTGGGCTTCCAGCACCAGGTGACCTGGCACGACGCCACGGCGAGCGCGTTCGAGCGCGATCCTGACG                   <  2:43974/124‑1                                                                                     CGCTGTGTCGAGCGCGCGCTCGACACAGCGCTGGGCTTCCAGCACCAGGTGACCTGGCACGACGCCACGGCGAGCGCGTTCGAGCGCGATCCTGACGGCGTC              <  1:9974/102‑1                                                                                                        TCGACACAGCGCTGGGCTTCCAGCACCAGGTGACCTGGCACGACGCCACGGCGAGCGCGTTCGAGCGCGATCCTGACGGCGTC              <  1:278394/83‑1                                                                                                        TCGACACAGCGCTGGGCTTCCAGCACCAGGTGACCTGGCACGACGCCACGGCGAGCGCGTTCGAGCGCGATCCTGACGGCGTC              >  2:278394/1‑83                                                                                                         CGACACAGCGCTGGGCTTCCAGCACCAGGTGACCTGGCACGACGCCACGGCGAGCGCGTTCGAGCGCGATCCTGACGGCGTCACGCTGACCCTG  <  2:601899/94‑1                                                                                                                                                                                                        CAGGGTCAGCGTGACGCCGTCAGGATCGCGCTCGAACGCGCTCGCCGTGGCGTCGTGCCAGGTCACCTGGTGCTGGAAGCCCAGCGCTGTGTCGAGCGCGCGCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3607321‑3607428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgagcgcgcgctcgacACAGCGCTGGGCTTCCAGCACCAGGTGACCTGGCACGACGCCACGGCGAGCGCGTTCGAGCGCGATCCTGACGGCGTCACGCTGACCCTG  <  AM260479/3607410‑3607321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.