| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3631033 | 19 (0.730) | 5 (0.200) | 5/194 | 1.7 | 21.4% | coding (22/1449 nt) | acrC6 | Cation/multidrug efflux system outer membrane porin |
| ? | AM260479 | = 3631035 | 19 (0.780) | coding (20/1449 nt) | acrC6 | Cation/multidrug efflux system outer membrane porin | |||||
GGCTCGGGCGTGGCCGGGCGCTCATAGTTGGGGCCGATGGCACAGCCGCCCAGCGCTGCGGCCAGGCAGGCACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3630957‑3631033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccggcTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATACCGGCGTGCTGTCGGTGGCCGCGGACAGCGCC < AM260479/3631035‑3630905 GGCTCGGGCGTGGCCGGGCGCTCATAGTTGGGGCCGATGGCACAGCCGCCCAGCGCTGCGGCCAGGCAGGCACCGGC > 1:627417/1‑77GGCTCGGGCGTGGCCGGGCGCTCATAGTTGGGGCCGATGGCACAGCCGCCCAGCGCTGCGGCCAGGCAGGCACCGGC < 2:627417/77‑1GGCTCGGGCGTGGCCGGGCGCTCATAGTTGGGGCCGATGGCACAGCCGCCCAGCGCTGCGGCCAGGCAGGCA > 1:1053876/1‑72GGCTCGGGCGTGGCCGGGCGCTCATAGTTGGGGCCGATGGCACAGCCGCCCAGCGCTGCGGCCAGGCAGGCA < 2:1053876/72‑1 ACAGCCGCCCAGCGCTGCGGCCAGGCAGGCACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGA > 2:877219/1‑133 CAGCCGCCCAGCGCTGCGGCCAGGCAGGCACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATA < 1:877219/134‑1 GCGCTGCGGCCAGGCAGCCACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATACCGGCGTGCT > 1:544768/1‑134 GCACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATACCGGCGTGCTGTCGGT > 1:402383/1‑123 GCACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATACCGGCGTGCTGTCGGT < 2:402383/123‑1 CACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATACCGGCGTGCTGTCGGTGGCCGCGGACAG < 2:626175/134‑1 ACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGT > 1:424419/1‑44 ACCGGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGT < 2:424419/44‑1 GGCTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATACCGGCGTGCTGTCGGTGGCCGCGGACAGCGCC > 1:28453/1‑134 GGCTCGGGCGTGGCCGGGCGCTCATAGTTGGGGCCGATGGCACAGCCGCCCAGCGCTGCGGCCAGGCAGGCACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3630957‑3631033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccggcTGGCCGGTGCCTGCCTGGCCGCAGCGCTGGGCGGCTGTGCCATCGGCCCCAACTATGAGCGCCCGGCCACGCCCGAGCCGGCGCAGTACCGCATCGATACCGGCGTGCTGTCGGTGGCCGCGGACAGCGCC < AM260479/3631035‑3630905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |