| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 30 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 22 (1.160) | 18/130 | 0.1 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/167‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTGGCGGT < AM260480/2912451‑2912330 GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCAC < 2:443702/134‑1 AGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGT < 2:118816/134‑1 CTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGT > 2:1164170/1‑131 CTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGT < 1:1164170/131‑1 GGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGAGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGG > 2:932071/1‑134 AAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCA > 2:691384/1‑127 AAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCA < 1:691384/127‑1 AAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGAGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG < 1:932071/134‑1 AAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGAT > 1:681678/1‑134 GTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTC < 1:183268/134‑1 GGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTG > 1:756492/1‑132 GGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTG > 2:323720/1‑132 TACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCA < 2:756492/134‑1 CCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA < 1:258838/74‑1 CCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA > 2:258838/1‑74 TGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACC < 1:438412/111‑1 TGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACC > 2:438412/1‑111 CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAG < 2:681678/133‑1 CCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCG > 2:989724/1‑134 CCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA > 2:581477/1‑52 CCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA < 1:581477/52‑1 ACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGC > 1:562426/1‑134 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGTCTGGC > 2:1120029/1‑134 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGC < 2:1142093/126‑1 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGC > 1:1142093/1‑126 CCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGC < 1:989724/134‑1 CATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG > 1:786848/1‑52 CATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG < 2:786848/52‑1 TGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGG < 1:880989/80‑1 TGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGG > 2:880989/1‑80 GCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGG > 2:14780/1‑134 AGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACC < 2:555819/46‑1 AGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACC > 1:555819/1‑46 CACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGT < 2:216420/52‑1 CACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGT > 1:216420/1‑52 GTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAG < 2:562426/134‑1 CGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCcttg > 2:221360/1‑92 CGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCcttg < 1:221360/96‑5 CGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCA < 1:969484/71‑1 CGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCA > 2:969484/1‑71 GGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTGGCGGT < 1:323720/134‑1 GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/167‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTGGCGGT < AM260480/2912451‑2912330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |