| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 4,016,601 | Δ1 bp | coding (203/969 nt) | h16_A3718 → | probable extra‑cytoplasmic solute receptor,putative component of transport system, tripartite tricarboxylate transport (TTT) family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 4,016,601 | 0 | A | . | 100.0% | 54.2 / NA | 13 | coding (203/969 nt) | h16_A3718 | probable extra‑cytoplasmic solute receptor,putative component of transport system, tripartite tricarboxylate transport (TTT) family |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (4/9); total (4/9) | |||||||||||
AAGGTCATGATCGGCGCCAACCCCGGCGGCGGCTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACGACAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACAAGGGCAACCCCAATGCGCTGATGGTGGTGGGCGCGGTGATGGTGGGCGCGATCGAGACCAACAAGCCGC > AM260479/4016498‑4016726 | aaGGTCATGATCGGCGCCAACCCCGGCGGCGGCTTTGACCAGACCGGCCGCTCGCTGGGAGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATcgcg < 2:672478/134‑1 (MQ=255) aTGATCGGCGCCAACCCCGGCGGCGGCTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGAc < 1:1012979/133‑1 (MQ=255) cGGCGCCAACCCCGGCGGCGGCTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGtt > 2:376333/1‑134 (MQ=255) aaCCCCGGCGGCGGCTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCaa > 1:429605/1‑133 (MQ=255) cggcggcTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACaa < 1:347391/134‑1 (MQ=255) cggcggcTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACaa < 1:408180/134‑1 (MQ=255) gcggcTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGAc < 1:320470/111‑1 (MQ=255) gcggcTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGAc > 2:320470/1‑111 (MQ=255) tGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACAAGGGCAAcc < 1:124394/133‑1 (MQ=255) cAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACAAGGGCAACCCCAAt < 2:429605/134‑1 (MQ=255) ggCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACAAGGGCAACCCCAATGCGCTg < 1:376333/134‑1 (MQ=255) aaGACCGCTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACAAGGGCAACCCCAATGCGCTGATGGTGGTGGGCGCGGTGATGGTGGGCGCGATCGAGACcaa > 2:270356/1‑133 (MQ=255) cTTCATACG‑CAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACAGACAAGGGCAACCCCAATGCGCTGATGGTGGTGGGCGCGGTGATGGTGGGCGCGATCGAGACCAACAAgccgc < 1:442568/134‑1 (MQ=255) | AAGGTCATGATCGGCGCCAACCCCGGCGGCGGCTTTGACCAGACCGGCCGCTCGCTGGGCGCCGCGATGATTGCCGCGGGCCAGGCCAAGACCGCTTCATACGACAACAAGGGCGGCGCCGGCGGCACCATCGCGCTGACCCAGTTCGTCAATACCGACAAGGGCAACCCCAATGCGCTGATGGTGGTGGGCGCGGTGATGGTGGGCGCGATCGAGACCAACAAGCCGC > AM260479/4016498‑4016726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |