New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2613558 =	9 (0.340)	3 (0.130)	3/184	2.1	27.7%	coding (1048/1353 nt)	h16_A2399	Na+ driven multidrug efflux pump
	?	AM260479	2613574 =	8 (0.360)					coding (1064/1353 nt)	h16_A2399	Na+ driven multidrug efflux pump

CCAGTCCGATGCCCCACAGCGAGCCGGCATAGATCAGCGTCGGAATCAGCGCGATCTTGTACGCGCGCAGGATAAACGCCGTCATCACCTGCACCGCGTCGAAGGCCTGGTAGAACGCCACGAACAGCACCAGCGGCAGCGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2613705‑2613558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcgctgccgcTGGTGCTGTTCGTGGCGTTCTACCAGGCCTTCGACGCGGTGCAGGTGATGACGGCGTTTATCCTGCGCG  >  AM260479/2613574‑2613642                                                                                                                                                                                                                           CCAGTCCGATGCCCCACAGCGAGCCGGCATAGATCAGCGTCGGAATCAGCGCGATCTTGTACGCGCGCAGGATAAACGCCGTCATCACCTGCACCGCGTCGAAGGCCTGGTAGAACGCCACGAACAGCACCAGC                                                                                     >  1:595003/1‑134                ACAGCGAGCCGGCATAGATCAGCGTCGGAATCAGCGCGATCTTGTACGCGCGCAGGATAAACGCCGTCATCACCTGCACCGCGTCGAAGGCCTGGTAGAACGCCACGAACAGCACCAGCGGCAGCGCTGCCGCT                                                                      <  2:595003/134‑1                                                                CGCGCAGGATAAACGCCGTCATCACCTGCACCGCGTCGAAGGCCTGGTAGAACGCCACGAACAGCACCAGCGGCAGCGCTGCCG                                                                        >  2:702098/1‑84                                                                  CGCAGGATAAACGCCGTCATCACCTGCACCGCGTCGAAGGCCTGGTAGAACGCCACGAACAGCACCAGCGGCAGCGCTGCCGCTGGTGCTGTTCGTGGCGTTCTACCAGGCCT                                         <  1:458146/113‑1                                                                                                GCGTCGAAGGCCTGGTAGAACGCCACGAACAGCACCAGCGGCAGCGCTGCCG                                                                        <  1:684150/52‑1                                                                                                       AGGCCTGGTAGAACGCCACGAACAGCACCAGCGGCAGCGCTGCCGCTGGTGCTGTTCGTGGCGTTCTACCAGGCCTTCGACGCGGTGCAGGTGATGACGGCGTTTATCCTGCG    <  2:458146/113‑1                                                                                                                                      CGGCAGCGCTGCCGCTGGTGCTGTTCGTGGCGTTCTACCAGGCCTTCGACGCGGTGCAGGTGATGACGGCGTTTATCCTGCGCG  >  1:702098/1‑84                                                                                                                                      CGGCAGCGCTGCCGCTGGTGCTGTTCGTGGCGTTCTACCAGGCCTTCGACGC                                  <  2:684150/52‑1                                                                                                                                                                                                                           CCAGTCCGATGCCCCACAGCGAGCCGGCATAGATCAGCGTCGGAATCAGCGCGATCTTGTACGCGCGCAGGATAAACGCCGTCATCACCTGCACCGCGTCGAAGGCCTGGTAGAACGCCACGAACAGCACCAGCGGCAGCGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2613705‑2613558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcgctgccgcTGGTGCTGTTCGTGGCGTTCTACCAGGCCTTCGACGCGGTGCAGGTGATGACGGCGTTTATCCTGCGCG  >  AM260479/2613574‑2613642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.