| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 159,885 | Δ1 bp | coding (149/939 nt) | h16_A0146 → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 159,883 | 0 | G | . | 100.0% | 15.9 / NA | 5 | coding (147/939 nt) | h16_A0146 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (2/3); total (2/3) | |||||||||||
CGGTGGATGTCAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCCGGGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGCCGCGCCGTCCGG > AM260479/159756‑160012 | cGGTGGATGTCAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAAccc < 2:427460/134‑1 (MQ=255) gccCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGgcg < 1:653837/134‑1 (MQ=255) cgcccgcgcccgCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGcgccg > 1:194931/1‑51 (MQ=255) cgcccgcgcccgCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGcgccg < 2:194931/51‑1 (MQ=255) gCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGCCGCGCCGTCcgg > 2:653087/1‑134 (MQ=255) | CGGTGGATGTCAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCCGGGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGCCGCGCCGTCCGG > AM260479/159756‑160012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |