| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 452,994 | 0 | T | . | 100.0% | 58.4 / NA | 14 | intergenic (‑19/+119) | h16_A0432/coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/7); total (7/7) | |||||||||||
GACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCGTTTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCG‑TTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCG > AM260479/452891‑453112 | gACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAg > 1:1146426/1‑134 (MQ=255) gatTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGAt < 1:108670/134‑1 (MQ=255) cGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAg < 2:809696/134‑1 (MQ=255) gcCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGaa > 1:849796/1‑67 (MQ=255) gcCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGaa < 2:849796/67‑1 (MQ=255) gcCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCG‑TTg > 1:662537/1‑134 (MQ=255) cGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCG‑TTGGGggcgg > 1:913365/1‑132 (MQ=255) gccgGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTTGGGGGCGGCAGTCATggcg > 1:880409/1‑134 (MQ=255) ccgGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGc > 1:969504/1‑97 (MQ=255) ccgGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGc < 2:969504/97‑1 (MQ=255) ggCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCG‑TTGGGGGCGGCAGTCATGGCGGCACt < 1:902899/134‑1 (MQ=255) agcaCCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCg < 1:680965/105‑1 (MQ=255) agcaCCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCg > 2:680965/1‑105 (MQ=255) cagcagCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCG‑TTGGGGGCGGCAGTCATGGCGGCACTTGCGAGgtcg < 2:1146426/133‑1 (MQ=255) | GACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCGTTTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCG‑TTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCG > AM260479/452891‑453112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |