| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 1,112,156 | 0 | C | . | 100.0% | 62.4 / NA | 15 | coding (2297/2469 nt) | xdhB1 | xanthine dehydrogenase, subunit B |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (8/7); total (8/7) | |||||||||||
AACGCGGCCAAGGGGGGAAAGTCCGGGGGCGCCCGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCGCCCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCAGCCACGGCGTCGCGGATCGCGAAGAACACCGAGAACGGCAGCAGCAGCGGCGGCTCG > AM260479/1112035‑1112269 | aaCGCGGCCAAGGGGGGAAAGTCCGGGGGCGCCCGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCTGGTGGc > 1:1150000/1‑134 (MQ=255) aCGCGGCCAAGGGGGGAAAGTCCGGGGGCGCCCGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCTGGTGGcc > 1:272605/1‑134 (MQ=255) ggggggAAAGTCCGGGGGCGCCCGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCa < 1:500832/134‑1 (MQ=255) tCCGGGGGCGCCCGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCGcctcg < 2:726453/105‑4 (MQ=255) tCCGGGGGCGCCCGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCGcctcg > 1:726453/1‑102 (MQ=255) ccGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGt < 2:67627/134‑1 (MQ=255) cAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCtggt > 1:516129/1‑96 (MQ=255) cAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCtggt < 2:516129/96‑1 (MQ=255) ccGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCtggt > 2:892826/1‑71 (MQ=255) ccGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCtggt < 1:892826/71‑1 (MQ=255) gCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCAGCCACGGCGTCGCGGATcg > 1:1101510/1‑134 (MQ=255) cgccgcGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCAGCCACGGCGTCGCGGATCGCGAAGAACACCGAGAACg > 2:739424/1‑134 (MQ=255) cgcgGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCAGCCACGGCGTCGCGGATCGCGAAGAACACCGAGAACGgca < 2:272605/134‑1 (MQ=255) cGACGGCGTCCAGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCa < 2:1165568/74‑1 (MQ=255) cGACGGCGTCCAGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCa > 1:1165568/1‑74 (MQ=255) aGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCAGCCACGGCGTCGCGGATCGCGAAGAACACCGAGAACGGCAGCAGCAGCGGCGGCTCg > 2:1185618/1‑120 (MQ=255) aGGATCG‑CCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCAGCCACGGCGTCGCGGATCGCGAAGAACACCGAGAACGGCAGCAGCAGCGGCGGCTCg < 1:1185618/120‑1 (MQ=255) | AACGCGGCCAAGGGGGGAAAGTCCGGGGGCGCCCGCAGGCGCGCGCTTCCTGCGATCGTTCCGCCAGCTCAGGCTGGCTGCGCCGCGGCTTCGCGCACGGCGTCGACGGCGTCCAGGATCGCCCTCGCTGGTGGCCGGGGCCTTCAGCGGCGGGTTGATGCGGTAGTCGCCAACGGCAGCCACGGCGTCGCGGATCGCGAAGAACACCGAGAACGGCAGCAGCAGCGGCGGCTCG > AM260479/1112035‑1112269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |