Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 1,231,117 Δ1 bp coding (2606/2652 nt) glnE → glutamine synthetase adenylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604791,231,1150G.100.0% 100.5 / NA 23coding (2604/2652 nt)glnEglutamine synthetase adenylyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (11/12);  total (11/12)

GACCGCGATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGGTGCAGTACCTGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGAC  >  AM260479/1230984‑1231223
                                                                                                                                   |                                                                                                            
gACCGCGATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACggt                                                                                                            >  2:121616/1‑133 (MQ=255)
   cgcgATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACggtg                                                                                                           >  1:1101829/1‑130 (MQ=255)
          ccgccgCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTg                                                                                                 <  2:1101829/134‑1 (MQ=255)
                                        tGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAg                                                                  >  1:749842/1‑134 (MQ=255)
                                            ccgcAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGa                                                              <  2:749842/134‑1 (MQ=255)
                                                aaGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGAcgcg                                                          >  1:183901/1‑134 (MQ=255)
                                                aaGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGAcgcg                                                          <  2:612228/134‑1 (MQ=255)
                                                   gTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGc                                                                    <  1:98371/121‑1 (MQ=255)
                                                   gTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGc                                                                    >  2:98371/1‑121 (MQ=255)
                                                                               accTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGtgct                                                                                            >  2:197591/1‑70 (MQ=255)
                                                                               accTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGtgct                                                                                            <  1:197591/70‑1 (MQ=255)
                                                                               accTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTgcgcg                            >  1:79630/1‑132 (MQ=255)
                                                                                ccTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAg                         <  1:583864/134‑1 (MQ=255)
                                                                                ccTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAg                         <  1:121616/134‑1 (MQ=255)
                                                                                   gTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGt                                                                                               >  1:274076/1‑63 (MQ=255)
                                                                                   gTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGt                                                                                               <  2:274076/63‑1 (MQ=255)
                                                                                    ttCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCgtg                     <  2:350507/134‑3 (MQ=255)
                                                                                             aaGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTggg            >  1:741457/1‑134 (MQ=255)
                                                                                               gCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGcc          <  2:741457/134‑1 (MQ=255)
                                                                                                  cGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCa                                                        >  1:602994/1‑86 (MQ=255)
                                                                                                  cGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCa                                                        <  2:602994/86‑1 (MQ=255)
                                                                                                  cGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGa       >  2:798410/1‑134 (MQ=255)
                                                                                                       gcggcgGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGc                    <  1:659071/116‑1 (MQ=255)
                                                                                                       gcggcgGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGc                    >  2:659071/1‑116 (MQ=255)
                                                                                                       gcggcgGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGAc  >  1:221467/1‑134 (MQ=255)
                                                                                                                                   |                                                                                                            
GACCGCGATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGGTGCAGTACCTGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGAC  >  AM260479/1230984‑1231223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: