Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,248,007 Δ1 bp coding (771/813 nt) h16_A3001 → transcriptional regulator, LysR‑family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,248,0060T.100.0% 75.3 / NA 19coding (770/813 nt)h16_A3001transcriptional regulator, LysR‑family
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (9/10);  total (9/10)

CGCTGCGCCACCTGGAGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGATTCGTCGCCGGCGTCGCCTATGATGCCCGAGCCGCGACCCGCAACCTTGCCCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACCGTGACGCACCTGGCCGTCAGCAGGGTGCCTACCTGCGCAGCTTTGTGTACACCTTCATCGAGCTGTTCTCGCCGACGCTCAACC  >  AM260479/3247871‑3248129
                                                                                                                                       |                                                                                                                            
cgcTGCGCCACCTGGAGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCtg                                                                                                                             <  1:748132/134‑2 (MQ=255)
                        tCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTg                                                                                                    >  2:536085/1‑134 (MQ=255)
                             cTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTgg                                                                                               >  2:950432/1‑134 (MQ=255)
                                      aTCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAAcgt                                                                                      <  2:298641/134‑3 (MQ=255)
                                                        aaGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                   <  2:586596/133‑1 (MQ=255)
                                                                   ggAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCa                                                                                                        <  1:395520/87‑1 (MQ=255)
                                                                   ggAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCa                                                                                                        >  2:395520/1‑87 (MQ=255)
                                                                    gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCAtc                                                                                                                   >  1:988843/1‑75 (MQ=255)
                                                                    gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCAtc                                                                                                                   <  2:988843/75‑1 (MQ=255)
                                                                    gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                   >  2:203785/1‑121 (MQ=255)
                                                                    gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                   <  1:203785/121‑1 (MQ=255)
                                                                      gaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTAcc                                                     <  2:409425/134‑1 (MQ=255)
                                                                        tCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTg                                                   <  1:536085/134‑1 (MQ=255)
                                                                             cTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                   <  1:6573/112‑1 (MQ=255)
                                                                             cTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                   >  2:6573/1‑112 (MQ=255)
                                                                                               gCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCAtct                                                                                                                  <  1:937406/49‑1 (MQ=12)
                                                                                               gCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCAtct                                                                                                                  >  2:937406/1‑49 (MQ=9)
                                                                                               gCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTgcg                                                 <  1:910637/113‑1 (MQ=255)
                                                                                               gCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTgcg                                                 >  2:910637/1‑113 (MQ=255)
                                                                                                                            cgaccGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTGCGCAGCTTTGTCTACACCTTCATCGAGCTGTTCTCGCCGACGCTCAAcc  >  2:884170/4‑134 (MQ=255)
                                                                                                                                       |                                                                                                                            
CGCTGCGCCACCTGGAGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGATTCGTCGCCGGCGTCGCCTATGATGCCCGAGCCGCGACCCGCAACCTTGCCCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACCGTGACGCACCTGGCCGTCAGCAGGGTGCCTACCTGCGCAGCTTTGTGTACACCTTCATCGAGCTGTTCTCGCCGACGCTCAACC  >  AM260479/3247871‑3248129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: