Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260480 69,908 +G intergenic (+89/‑184) h16_B0060 → / → h16_B0061 conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM26048069,9081.G100.0% 81.7 / NA 22intergenic (+89/‑184)h16_B0060/h16_B0061conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (12/10);  total (12/10)

GTTGGACCCGGCTGTGCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTACGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACT  >  AM260480/69789‑70011
                                                                                                                        |                                                                                                       
gTTGGACCCGGCTGTGCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTc                                                                                            >  1:784261/1‑134 (MQ=255)
                  ggCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTcg                                                                          >  1:1058449/1‑134 (MQ=255)
                            tGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGcccc                                                                                                 <  1:172281/101‑1 (MQ=255)
                            tGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGcccc                                                                                                 >  2:172281/1‑101 (MQ=255)
                               gCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGtgtg                                                             <  2:450049/134‑1 (MQ=255)
                                 cGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGAt                                                           <  1:901625/134‑1 (MQ=255)
                                  gTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATg                                                          >  2:1094468/1‑134 (MQ=255)
                                                     ttGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATc                                       <  2:784261/134‑1 (MQ=255)
                                                               aCGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGtt                             <  2:1058449/134‑1 (MQ=255)
                                                               aCGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGtt                             <  2:2945/134‑1 (MQ=255)
                                                               aCGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGtt                             >  1:2945/1‑134 (MQ=255)
                                                               aCGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGt                              <  1:756082/133‑1 (MQ=255)
                                                               aCGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGt                              >  2:756082/1‑133 (MQ=255)
                                                                        cATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGAt                                                           <  1:770308/95‑1 (MQ=255)
                                                                        cATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGAt                                                           >  2:770308/1‑95 (MQ=255)
                                                                                   gcgcgcCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGc         >  2:1002563/1‑134 (MQ=255)
                                                                                          cTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACt  >  1:1064130/1‑134 (MQ=255)
                                                                                          cTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACt  >  2:768914/1‑134 (MQ=255)
                                                                                                       cTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGcc                                                                              >  1:785085/1‑45 (MQ=255)
                                                                                                       cTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGcc                                                                              <  2:785085/45‑1 (MQ=255)
                                                                                                       cTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGgt                                                                >  2:51826/1‑59 (MQ=255)
                                                                                                       cTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGgt                                                                <  1:51826/59‑1 (MQ=255)
                                                                                                                        |                                                                                                       
GTTGGACCCGGCTGTGCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTACGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACT  >  AM260480/69789‑70011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: