| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 787,768 | 1 | . | T | 100.0% | 72.5 / NA | 20 | intergenic (‑548/+744) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (9/11); total (9/11) | |||||||||||
AGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAAC > AM260479/787654‑787864 | aGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGa > 2:37335/1‑134 (MQ=255) ttCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAgtgtg‑ttgcc > 1:175656/1‑100 (MQ=255) ttCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAgtgtg‑ttgcc < 2:175656/104‑5 (MQ=255) cccACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcgc > 1:54155/1‑134 (MQ=255) ccACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcgcg < 2:713213/134‑1 (MQ=255) cTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTccccc > 2:413714/1‑106 (MQ=255) cTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTccccc < 1:413714/106‑1 (MQ=255) cAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATAtg < 1:334746/133‑1 (MQ=255) cAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAAACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATAtg < 1:1085929/133‑1 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAAc > 1:853787/1‑134 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATG‑GCGACGAACg > 1:842982/1‑134 (MQ=255) aTCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGcc < 1:410891/134‑1 (MQ=255) ggATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc < 1:37335/132‑1 (MQ=255) gATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTaa < 2:54155/134‑1 (MQ=255) ggggTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCtt < 1:934866/134‑1 (MQ=255) ccTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAAc > 2:975199/1‑133 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcga > 1:624202/1‑85 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcga < 2:624202/85‑1 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc > 2:2568/1‑104 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc > 2:367116/1‑104 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc < 1:367116/104‑1 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc < 1:2568/104‑1 (MQ=255) | AGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAAC > AM260479/787654‑787864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |