| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 787,879 | 1 | . | T | 100.0% | 143.2 / NA | 38 | intergenic (‑659/+633) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (19/19); total (19/19) | |||||||||||
CCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGG > AM260479/787771‑787993 | ccGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATG‑GCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt < 2:842982/134‑1 (MQ=255) cGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt > 2:932665/1‑134 (MQ=255) tttCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATc > 1:563834/1‑133 (MQ=255) tCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTc < 2:853787/134‑1 (MQ=255) cccccTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTcc > 2:526566/1‑134 (MQ=255) cTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt > 1:329995/1‑89 (MQ=255) cTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:329995/90‑2 (MQ=255) tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc > 2:549206/1‑132 (MQ=255) tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg > 1:1039174/1‑134 (MQ=255) ttCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTAGCg < 1:549206/133‑1 (MQ=255) tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATaa < 1:1160370/107‑1 (MQ=255) tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATaa > 2:1160370/1‑107 (MQ=255) cgcgcgGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCggg < 1:932665/133‑1 (MQ=255) aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCgcagca > 1:467421/1‑134 (MQ=255) aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCgcagca > 2:1125455/1‑134 (MQ=255) aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCgcagca > 2:1125077/1‑134 (MQ=255) cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCAtt > 2:675030/1‑134 (MQ=255) cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCAtt > 2:616155/1‑134 (MQ=255) cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCAtt > 2:80728/1‑134 (MQ=255) tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 2:1066748/134‑1 (MQ=255) tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 2:1039174/134‑1 (MQ=255) ccAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGc < 1:975199/134‑1 (MQ=255) ggCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGtt > 1:444451/1‑75 (MQ=255) ggCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGtt < 2:444451/75‑1 (MQ=255) cTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTaa < 1:526566/134‑1 (MQ=255) tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 1:1125077/134‑1 (MQ=255) tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:563834/134‑1 (MQ=255) tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:467421/134‑1 (MQ=255) tttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:1052359/131‑1 (MQ=255) tttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg > 1:1052359/1‑131 (MQ=255) ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCAt < 2:727088/111‑1 (MQ=255) ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCAt > 1:727088/1‑111 (MQ=255) ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGgcg > 1:458523/1‑133 (MQ=255) tAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATgg < 1:1125455/134‑1 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt < 2:1148166/44‑1 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt > 1:1148166/1‑44 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGtt > 1:624684/1‑60 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGtt < 2:624684/60‑1 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 2:728099/109‑1 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg > 1:728099/1‑109 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCCGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:312101/119‑1 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCCGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg > 1:312101/1‑119 (MQ=255) aaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc < 2:260421/67‑1 (MQ=255) aaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc > 1:260421/1‑67 (MQ=255) | CCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGG > AM260479/787771‑787993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |