Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 2,787,923 +C intergenic (+165/‑55) cafA2 → / → moaA1 Ribonuclease G and E/molybdopterin biosynthesis protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604792,787,9201.C100.0% 52.9 / NA 15intergenic (+162/‑58)cafA2/moaA1Ribonuclease G and E/molybdopterin biosynthesis protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (9/6);  total (9/6)

GTCTCCTTTTTTCATGGGCAGCCGGCCGGATGAATCCCCGCCATCTCCGGGGGATGCGGGTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCATTCCGATTTTCGACCTGCGCGACCATCGCTACCGCTCGATGACGCCCAG  >  AM260479/2787806‑2788042
                                                                                                                   |                                                                                                                          
gTCTCCTTTTTTCATGGGCAGCCGGCCGGATGAATCCCCGCCATCTCCGGGGGATGCGGGTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCAcgcc                                                                                                          >  1:588869/1‑134 (MQ=255)
  ctcCTTTTTTCATGGGCAGCCGGCCGGATGAATCCCCGCCATCTCCGGGGGATGCGGGTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCAcgccgc                                                                                                        >  2:405274/1‑134 (MQ=255)
        ttttCATGGGCAGCCGGCCGGATGAATCCCCGCCATCTCCGGGGGATGCGGGTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAgg                                                                                                    <  2:1028574/132‑1 (MQ=255)
                             aTGAATCCCCGCCATCTCCGGGGGATGCGGGTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGccca                                                                             <  1:405274/134‑1 (MQ=255)
                                                         gggTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCAtt                                                 >  1:147725/1‑134 (MQ=255)
                                                         gggTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCAtt                                                 >  2:333291/1‑134 (MQ=255)
                                                           gTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCATTcc                                               >  1:609360/1‑134 (MQ=255)
                                                                      ccGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCATTCCGATTTTCGAcc                                    <  2:589579/134‑1 (MQ=255)
                                                                                               aGGCATCCGGCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCATTCCGATTTTCGACCTGCGCGACCATCGCTACCGCTCGAt           <  1:333291/134‑1 (MQ=255)
                                                                                                       ggCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCg                                                                                          >  1:857757/1‑47 (MQ=38)
                                                                                                       ggCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCg                                                                                          >  1:972412/1‑47 (MQ=38)
                                                                                                       ggCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCg                                                                                          <  2:857757/47‑1 (MQ=38)
                                                                                                       ggCCCTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCg                                                                                          <  2:972412/47‑1 (MQ=38)
                                                                                                         cccTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCATTCCGATTTTCGACCTGCGCGACCATCGCTACCGCTCGATGACGCCCAg  >  1:277901/1‑133 (MQ=255)
                                                                                                         cccTCGAGCGCCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCATTCCGATTTTCGACCTGCGCGACCATCGCTACCGCTCGATGACGCCCAg  >  2:377227/1‑133 (MQ=255)
                                                                                                                   |                                                                                                                          
GTCTCCTTTTTTCATGGGCAGCCGGCCGGATGAATCCCCGCCATCTCCGGGGGATGCGGGTGCCCCACCCCCGCCTCGGCTAGAATGGCAGCAGAAGGCATCCGGCCCTCGAGCGCCCTGATTTGGCCACGCCGCCAGGCCGCTCCCCGGACGCCGTGCCCACCCACAGGCCATGACCGAATCCGTCATTCCGATTTTCGACCTGCGCGACCATCGCTACCGCTCGATGACGCCCAG  >  AM260479/2787806‑2788042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: